Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 451 a.a., DNA repair protein RadA from Methylophilus sp. DMC18

 Score =  501 bits (1291), Expect = e-146
 Identities = 248/454 (54%), Positives = 334/454 (73%), Gaps = 5/454 (1%)

Query: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGRGTKFAGYAGAGSSEV 60
           MAK KT Y C ECG   P+WQGQC +CH WNT+ E    AA+  R   FA  A   ++++
Sbjct: 1   MAKAKTQYTCTECGATEPKWQGQCPSCHAWNTLVETVPEAATTSR---FASLAP--TAQL 55

Query: 61  KTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQM 120
           + L  ++   + R  +   E DRVLGGG+V G  +LIGG PG GKSTLLLQT+C++++ +
Sbjct: 56  QKLADVEAQDVSRQATGITEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQTVCNVSQSL 115

Query: 121 PALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVDSIQVMH 180
            A Y++GEES QQ+AMRAHRLGL  +++ +L+E ++E+I ++  Q  P V+V+DSIQ ++
Sbjct: 116 KAFYISGEESAQQIAMRAHRLGLDASQVDVLAEINLEKISQVLQQHQPDVVVIDSIQTVY 175

Query: 181 MSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCSVMF 240
              + S+PGSV+QVRE ++ LTR AKQ GI++I+VGHVTK+GSLAGP+VLEH +D  + F
Sbjct: 176 SEALQSAPGSVAQVRECSAQLTRVAKQLGISMILVGHVTKEGSLAGPRVLEHIVDSVLYF 235

Query: 241 EGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVMVV 300
           EGD +S +R +R+ KNRFGA+NELGVFAMTE+GL+EV+NPSA+FLS  E    GS + V 
Sbjct: 236 EGDQNSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHESPVPGSCITVT 295

Query: 301 WEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVNVV 360
            EGTRPLLVE+Q LVD +   NP+R+ VG++ NRLAMLLAV+HRH G+   DQDVF+N V
Sbjct: 296 QEGTRPLLVEIQALVDTAHAPNPKRLCVGLEQNRLAMLLAVLHRHAGVACYDQDVFINAV 355

Query: 361 GGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAKHG 420
           GGVK++E + DL +LLA+VSS +   LP+ L+VFGEVGL+GE+RPV  GQERL EAAK G
Sbjct: 356 GGVKISEPAVDLAVLLAIVSSLKNKPLPNKLIVFGEVGLAGEVRPVQRGQERLKEAAKLG 415

Query: 421 FKRAIVPRANVPKKPPVGMEVVGVSKLSEALEAI 454
           F  AI+P+AN PK    GM+V  V +L  A++ +
Sbjct: 416 FTHAIIPKANAPKGGIAGMQVEAVDRLEHAIDVM 449