Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 460 a.a., DNA repair protein RadA from Escherichia coli ECRC98

 Score =  696 bits (1795), Expect = 0.0
 Identities = 349/450 (77%), Positives = 398/450 (88%), Gaps = 4/450 (0%)

Query: 5   KTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASP--GRGTKFAGYAG-AGSSEVK 61
           K A+VCNECG D+PRWQGQCSACH WNTITEVRL AASP   R  + +GYAG AG ++V+
Sbjct: 6   KRAFVCNECGADYPRWQGQCSACHAWNTITEVRL-AASPTVARNERLSGYAGSAGVAKVQ 64

Query: 62  TLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQMP 121
            L  I L  LPR  + F E DRVLGGG+VPGSAILIGG+PGAGKSTLLLQTLC LA+QM 
Sbjct: 65  KLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMK 124

Query: 122 ALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVDSIQVMHM 181
            LYVTGEESLQQVAMRAHRLGLPT+ L MLSETS+EQIC IA +E PK++V+DSIQVMHM
Sbjct: 125 TLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184

Query: 182 SDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCSVMFE 241
           +DV SSPGSV+QVRE+A+YLTRFAK  G+A++MVGHVTKDGSLAGPKVLEHCIDCSV+ +
Sbjct: 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244

Query: 242 GDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVMVVW 301
           GD+DSR+RTLRSHKNRFGA+NELGVFAMTE+GL+EV+NPSAIFLSRG+E +SGS VMVVW
Sbjct: 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304

Query: 302 EGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVNVVG 361
           EGTRPLLVE+Q LVD+S M+NPRRVAVG++ NRLA+LLAV+HRHGGLQM+DQDVFVNVVG
Sbjct: 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364

Query: 362 GVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAKHGF 421
           GVKVTETSADL LLLAMVSS R   LP DLVVFGEVGL+GEIRPVP+GQER+ EAAKHGF
Sbjct: 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424

Query: 422 KRAIVPRANVPKKPPVGMEVVGVSKLSEAL 451
           +RAIVP ANVPKK P GM++ GV KLS+AL
Sbjct: 425 RRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454