Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase J (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 236 a.a., RlmE family RNA methyltransferase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  137 bits (346), Expect = 1e-37
 Identities = 84/199 (42%), Positives = 112/199 (56%), Gaps = 3/199 (1%)

Query: 6   RTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPGGW 65
           ++ SS +W+     D + + A+  G RSRAAFKL E+  K +LI+ G  V+DLGAAPGGW
Sbjct: 37  KSMSSQQWIKRQLSDKWSEKARAEGWRSRAAFKLIEIDDKFRLIKRGSKVIDLGAAPGGW 96

Query: 66  SQVAVKLVGDKGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADKVDVVLSDM 125
            QVA  L    G V   D+L + PI G   LQ DF    V + L+  +G    D+VLSDM
Sbjct: 97  VQVA--LNRGAGAVAGVDLLMIAPIPGATLLQADFTHPGVDQQLIDAIGG-APDLVLSDM 153

Query: 126 APNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVKEAFKVV 185
           A N  G    D  + + L+E+A D   + L P G+F  K FQG      +  ++E F+ V
Sbjct: 154 AHNTVGHRQTDHLKIIALIEVAADFAIRTLRPGGNFVSKNFQGGDAGGVLARLREEFETV 213

Query: 186 KTRKPDSSRARSREVYLVA 204
           K  KP SSR  S EV+LVA
Sbjct: 214 KYVKPASSRKDSAEVFLVA 232