Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase J (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 209 a.a., 23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent from Escherichia coli BL21

 Score =  314 bits (804), Expect = 9e-91
 Identities = 152/208 (73%), Positives = 177/208 (85%)

Query: 1   MSGKKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGA 60
           M+GKKR+ASS+RW+ EHF D YV+ AQK+GLRSRA FKL+E+QQ D+L +PGMTVVDLGA
Sbjct: 1   MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGA 60

Query: 61  APGGWSQVAVKLVGDKGKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRVGADKVDV 120
           APGGWSQ  V  +G KG++IACD+LPMDPIVGVDFLQGDFR+E V++ALL RVG  KV V
Sbjct: 61  APGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQV 120

Query: 121 VLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVKE 180
           V+SDMAPNMSG+  VD PRAMYLVELAL+MC  VLAP GSF VKVFQGEGFDEY++ ++ 
Sbjct: 121 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 180

Query: 181 AFKVVKTRKPDSSRARSREVYLVATGYK 208
            F  VK RKPDSSRARSREVY+VATG K
Sbjct: 181 LFTKVKVRKPDSSRARSREVYIVATGRK 208