Pairwise Alignments

Query, 308 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 304 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  355 bits (912), Expect = e-103
 Identities = 192/310 (61%), Positives = 240/310 (77%), Gaps = 16/310 (5%)

Query: 1   MAGASLLTLLDDIASILDDVALMSKVAAKKTAGVLGDDLALNAQQVTGVSADRELPVVWA 60
           MAG+SLL L+DDIA++LDDVALM+K+AAKKTAGVLGDDLALNAQQV+GV A+RE+PVVWA
Sbjct: 1   MAGSSLLVLIDDIAAVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWA 60

Query: 61  VALGSFRNKLILVPAAMLISAFIPWAVTPLLMFGGLFLCFEGFEKLHHSYSHRK-DKHSE 119
           VA GSF NKLILVP A+LISAF PWAVTPLLM GG +LCFEGFEKL H + H K + H+E
Sbjct: 61  VAKGSFVNKLILVPTALLISAFAPWAVTPLLMLGGAYLCFEGFEKLAHKFLHSKVEDHAE 120

Query: 120 QAE--PDVADIS-DLAAYEKEKVQGAIRTDFVLSAEIIAITLGIVADKSLSTQFFTLAVI 176
            A+    VAD + DL A+EK+K++GAIRTDF+LSAEIIAITLG VAD  L+ Q   L+ I
Sbjct: 121 HAQLVKAVADPAIDLVAFEKDKIKGAIRTDFILSAEIIAITLGTVADAPLTQQVIVLSGI 180

Query: 177 GIVMTVGVYGLVAAIVKMDDAGLYLSQRQGESSFTRFNRKVGFGLLSAAPLLMKSLTIIG 236
            IVMTVGVYGLVA IVK+DD GL+L+Q+ G+++     R +G  +L AAP +MKSL++IG
Sbjct: 181 AIVMTVGVYGLVAGIVKLDDLGLWLTQKPGQAA-----RSIGGAILRAAPYMMKSLSVIG 235

Query: 237 TAAMFMVGGGILTHGLHWVSEQIHHAEQWVSAIAVVGPVLGLLTPSVLNAFFGIAAGAVA 296
           TAAMF+VGGGILTHGL      +HH   W+  ++     +  L P++LN   GI AGAV 
Sbjct: 236 TAAMFLVGGGILTHGL----PVVHH---WIETVSQSAGGVAWLVPTLLNGVAGIIAGAVV 288

Query: 297 VLLMTGIQKL 306
           + +++G+ KL
Sbjct: 289 LAVVSGVGKL 298