Pairwise Alignments

Query, 308 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 302 a.a., Inner membrane protein YedI from Variovorax sp. SCN45

 Score =  327 bits (837), Expect = 3e-94
 Identities = 181/308 (58%), Positives = 224/308 (72%), Gaps = 16/308 (5%)

Query: 4   ASLLTLLDDIASILDDVALMSKVAAKKTAGVLGDDLALNAQQVTGVSADRELPVVWAVAL 63
           +SLL LLDDIA++LDDV++++KVAAKKTAGVLGDDLALNAQQV+GV A+RE+PVVWAV  
Sbjct: 3   SSLLLLLDDIATVLDDVSVLTKVAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWAVCK 62

Query: 64  GSFRNKLILVPAAMLISAFIPWAVTPLLMFGGLFLCFEGFEKLHHSYSHRKDKHSEQA-- 121
           GSF NK ILVPAA+ I  ++PW VTPLLM GG FLCFEG EKL H + H+K  H+E    
Sbjct: 63  GSFINKAILVPAALAIGTWLPWLVTPLLMVGGAFLCFEGAEKLAHKFLHKK-AHAEDTGR 121

Query: 122 -EPDVADIS-DLAAYEKEKVQGAIRTDFVLSAEIIAITLGIVADKSLSTQFFTLAVIGIV 179
            E  VAD S D+ A EK+K++GA+RTDF+LSAEIIAITLG V  +  +TQ   L  I ++
Sbjct: 122 HEQAVADASVDVVAIEKDKIKGAVRTDFILSAEIIAITLGTVQGQPFTTQLSVLVGIALI 181

Query: 180 MTVGVYGLVAAIVKMDDAGLYLSQRQGESSFTRFNRKVGFGLLSAAPLLMKSLTIIGTAA 239
           MT+GVYGLVA IVK+DDAGLYLSQR G +S     R VG G+L AAP LMK+L++ GTAA
Sbjct: 182 MTIGVYGLVAGIVKLDDAGLYLSQRAGAAS-----RAVGRGILVAAPWLMKALSVAGTAA 236

Query: 240 MFMVGGGILTHGLHWVSEQIHHAEQWVSAIAVVGPVLGLLTPSVLNAFFGIAAGAVAVLL 299
           MF+VGGGIL HG+  +    H  E W  A    G V G L    +NA  G+ AGA+ + +
Sbjct: 237 MFLVGGGILVHGVPALG---HAVEDWAKA---TGGVFGTLGSMGVNAGVGVVAGAIVLAV 290

Query: 300 MTGIQKLR 307
           +  + KLR
Sbjct: 291 VELVGKLR 298