Pairwise Alignments

Query, 308 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 304 a.a., conserved inner membrane protein from Pseudomonas putida KT2440

 Score =  346 bits (888), Expect = e-100
 Identities = 192/310 (61%), Positives = 234/310 (75%), Gaps = 18/310 (5%)

Query: 1   MAGASLLTLLDDIASILDDVALMSKVAAKKTAGVLGDDLALNAQQVTGVSADRELPVVWA 60
           MAG+SLL L+DDIA++LDDV+LM+KVAAKKTAGVLGDDLALNAQQVTGV ADRELPVVWA
Sbjct: 1   MAGSSLLVLIDDIATLLDDVSLMTKVAAKKTAGVLGDDLALNAQQVTGVRADRELPVVWA 60

Query: 61  VALGSFRNKLILVPAAMLISAFIPWAVTPLLMFGGLFLCFEGFEKLHHSYSHRKDKHSEQ 120
           VA GSF NK ILVPAA+LISAFIPWAVTPLLM GG FLCFEGFEKL H + H K++   Q
Sbjct: 61  VAKGSFVNKAILVPAALLISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKFLHSKEEDEAQ 120

Query: 121 AE---PDVADIS-DLAAYEKEKVQGAIRTDFVLSAEIIAITLGIVADKSLSTQFFTLAVI 176
            E     VAD S DL A+EK K++GA+RTDF+LSAEIIAITLGIVAD  L+ Q   L+ I
Sbjct: 121 HEARKEAVADASVDLVAFEKAKIKGAVRTDFILSAEIIAITLGIVADSPLTQQIIVLSGI 180

Query: 177 GIVMTVGVYGLVAAIVKMDDAGLYLSQRQGESSFTRFNRKVGFGLLSAAPLLMKSLTIIG 236
            +VMT+GVYGLV  IVK+DD GL+++++      +R  + VG G+L AAP +MKSL++IG
Sbjct: 181 AVVMTIGVYGLVGGIVKLDDLGLWMARKT-----SRLIQAVGNGILRAAPYMMKSLSVIG 235

Query: 237 TAAMFMVGGGILTHGLHWVSEQIHHAEQWVSAIAVVGPVLGLLTPSVLNAFFGIAAGAVA 296
           TAAMF+VGGGIL HG+    E +HHA +  S         G LT ++LN   G+ AGAV 
Sbjct: 236 TAAMFLVGGGILVHGI----EPLHHAIEAFSEGRG-----GALTSALLNGGVGVLAGAVV 286

Query: 297 VLLMTGIQKL 306
           + +++   KL
Sbjct: 287 LAVVSVAGKL 296