Pairwise Alignments

Query, 308 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 323 a.a., Membrane protein, putative from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  306 bits (783), Expect = 5e-88
 Identities = 176/329 (53%), Positives = 224/329 (68%), Gaps = 34/329 (10%)

Query: 1   MAGASLLTLLDDIASILDDVALMSKVAA------------------KKTAGVLGDDLALN 42
           MAG SLL L+DDIA+ILDDVALM+KVAA                  KKTAGVLGDDLALN
Sbjct: 1   MAGTSLLALIDDIATILDDVALMTKVAARKSAAVADDVAAMTQLAAKKTAGVLGDDLALN 60

Query: 43  AQQVTGVSADRELPVVWAVALGSFRNKLILVPAAMLISAFIPWAVTPLLMFGGLFLCFEG 102
           AQQVTGV ADRELPVVWAVA GS  NK ILVP+A++IS   PWA+TPLLM GGLFLCFEG
Sbjct: 61  AQQVTGVKADRELPVVWAVAKGSLMNKAILVPSALVISVIAPWAITPLLMLGGLFLCFEG 120

Query: 103 FEKLHHSYSHRKDK---HSEQAEPDVADIS-DLAAYEKEKVQGAIRTDFVLSAEIIAITL 158
            EKL H++   K +   H E+    VA+ + DL A+EK+K++GA+RTDF+LSAEII ITL
Sbjct: 121 AEKLWHAFGPHKAEDAAHREELVEAVANENVDLVAFEKQKIKGAVRTDFILSAEIIVITL 180

Query: 159 GIVADKSLSTQFFTLAVIGIVMTVGVYGLVAAIVKMDDAGLYLSQRQGESSFTRFNRKVG 218
           G VA   +  +   L  I ++MTVGVYGLVA IVK+DD GL+L+++        + + +G
Sbjct: 181 GTVAAVGMGQRIAVLVGISLIMTVGVYGLVAGIVKLDDLGLHLNRQA-----AAWKQSLG 235

Query: 219 FGLLSAAPLLMKSLTIIGTAAMFMVGGGILTHGLHWVSEQIHHAEQWVSAIAVVGPVLGL 278
            G+L+AAP LMK+L+I+GTAAMF+VGGGIL HG+      + H    + A A     +G 
Sbjct: 236 RGILAAAPWLMKTLSIVGTAAMFLVGGGILVHGI----PALGHG---IEAFAATLGWIGS 288

Query: 279 LTPSVLNAFFGIAAGAVAVLLMTGIQKLR 307
           L  S+  A  G+ AG V + L++  ++LR
Sbjct: 289 LASSLAGALAGLVAGGVVLALVSVGKRLR 317