Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  286 bits (731), Expect = 2e-81
 Identities = 170/395 (43%), Positives = 238/395 (60%), Gaps = 7/395 (1%)

Query: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
           ++FA LGL+ AL +A+       PT VQQ AIPA+L GRDL+  +QTG+GKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135
           + L+       + +  P  +P  LVL PTRELA QV ++    A  L    PL    + G
Sbjct: 61  ERLFPAGHPDKSQRHGPR-QPRVLVLTPTRELAAQVHDSFKVYARDL----PLVSACIFG 115

Query: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
           GV +  Q+  ++    ++VA PGRLLDL  Q  + L  ++ LVLDEADR+L+MGF  D++
Sbjct: 116 GVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVK 175

Query: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKG 255
           K++A +P ++Q LLFSAT  + +  LA KLL N P ++E +  N  V  IE+++Y +   
Sbjct: 176 KVLARLPAKRQNLLFSATFSKDITDLADKLLHN-PERIEVTPPNTTVERIEQRVYRLPAS 234

Query: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315
            K   L  L+    W QVLVF   +  A+ +A+ L K G+ AAA+HG K Q  R++ LAD
Sbjct: 235 HKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALAD 294

Query: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375
           FKA+ ++VLVATD+ ARG+ +D LP V+N +LP     YVHRIGRT RAG  G AISLV 
Sbjct: 295 FKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVA 354

Query: 376 HGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEK 410
             E   L +I  +T + +    L  F  +   +EK
Sbjct: 355 PDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEK 389