Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  312 bits (800), Expect = 1e-89
 Identities = 189/420 (45%), Positives = 256/420 (60%), Gaps = 25/420 (5%)

Query: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
           + FA+LGL   L + L       PT VQ  AIPA+LAGRDL+A +QTG+GKT  F LP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135
           Q    ++A++   + V +    ALVLVPTRELA QV   +   A  L    PL    + G
Sbjct: 61  Q----RLALE--GEKVASNSIRALVLVPTRELAEQVHNNVREYAENL----PLTTYAVYG 110

Query: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
           GV++  Q+  L     L+VATPGRLLDL  Q+ +  + ++ LVLDEADR+L++GF  ++Q
Sbjct: 111 GVSINPQMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQ 170

Query: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKG 255
            + A +P+++QTLLFSAT  + +  LAG L  NDPL +E S RNA    +++ L  V+K 
Sbjct: 171 SVYAALPRKRQTLLFSATFSDQIRMLAG-LALNDPLSIEVSPRNATAASVKQWLVPVDKK 229

Query: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315
            KA     LL++ +W QVLVF   R+  D + +RL+  G+NA  +HG++ Q  R + L  
Sbjct: 230 RKADLFCHLLRKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDS 289

Query: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375
           FKA  +QVLVATD+ ARG+ +D LP+V+NLDLP  A  YVHRIGRT RAG KG AISLVC
Sbjct: 290 FKAREVQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVC 349

Query: 376 HGEMPNLTAIRNLTARALPLVFLADF------PVTDKPSEKIIDGAENKVIPKRPPRDKQ 429
             E+  L AI  LT + LP     DF      P+TD   + I         PK+P + K+
Sbjct: 350 ADEVQLLAAIEVLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKK-------PKKPKKPKE 402