Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 461 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  290 bits (741), Expect = 9e-83
 Identities = 169/385 (43%), Positives = 245/385 (63%), Gaps = 19/385 (4%)

Query: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
           ++F  LGLN  + +A+  +    PT +QQ AIPA+L GRDL+A +QTG+GKT  F LPLL
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 76  QILWQQIAVQTTAKSVPAAK---PL-ALVLVPTRELALQVSEALHALASQLSTSAPLNIQ 131
           ++L          K+ P AK   P+ AL+L PTRELA Q+ E +   +  L+    +   
Sbjct: 61  ELL---------VKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLN----IRSL 107

Query: 132 LLCGGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFW 191
           ++ GGV++  Q+  L     +++ATPGRLLDL  Q+ + LD I+ LVLDEADR+L+MGF 
Sbjct: 108 VVFGGVSINPQMMKLRGGVDVLIATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFI 167

Query: 192 PDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYL 251
            D+++++A +P R+Q LLFSAT  + + +LA KLL N PL+VE + RN    ++ + ++ 
Sbjct: 168 HDIRRVLAKLPARRQNLLFSATFSDEIKALAEKLLHN-PLEVEVARRNTASEQVTQHVHF 226

Query: 252 VNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQ 311
           V+K  K + L  ++ Q  W QVLVF   +  A+ +A++L K GI +AA+HG K Q  R++
Sbjct: 227 VDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR 286

Query: 312 TLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAI 371
            LADFK+  I+VLVATD+ ARG+ ++ LP V+N +LP     YVHRIGRT RA A G A+
Sbjct: 287 ALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEAL 346

Query: 372 SLVCHGEMPNLTAIRNLTARALPLV 396
           SLVC  E   L  I  L  + +P +
Sbjct: 347 SLVCVDEHKLLRDIERLLKKEIPRI 371