Pairwise Alignments

Query, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 279 a.a., transposase, IS3 family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  184 bits (468), Expect = 1e-51
 Identities = 104/258 (40%), Positives = 148/258 (57%), Gaps = 2/258 (0%)

Query: 3   VSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLV 62
           V  SGYY W     +    +  +L   ++Q + +S G  G R++ + LR  G Q G   V
Sbjct: 10  VHPSGYYAWRSCAKSKRQCDNERLIGQLKQCWLESGGVYGYRKLHRDLRDLGEQCGINRV 69

Query: 63  RKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGEGW 122
            ++M R   +A Q    K  T+      V  N L   FNP++ N+ W  D+TY+KT EGW
Sbjct: 70  HRLMQRAGQRA-QVGYRKPRTRSGEQHVVTQNRLERQFNPLAPNKAWVTDITYIKTHEGW 128

Query: 123 MYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSKQF 182
           +YL  VMDL+SRRI+GW +  R+T +L   AL+ A   R+PA  ++ HS +GSQYTS  +
Sbjct: 129 LYLGAVMDLFSRRIIGWSMGSRITKELALDALLMAVWSRKPAGKVLVHSAQGSQYTSHDW 188

Query: 183 GRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIK-YY 241
              LS++G+  SM   G C DNAV E FF  LK + I +    TR+  K DV  YI+ +Y
Sbjct: 189 SEFLSAHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKRKIYATRDDAKMDVFNYIEMFY 248

Query: 242 NLERLHSANNDLSPVEFE 259
           N +R HS+N+ LSP+E+E
Sbjct: 249 NPKRQHSSNDGLSPLEYE 266