Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 354 a.a., DNA polymerase IV from Pseudomonas putida KT2440

 Score =  327 bits (838), Expect = 3e-94
 Identities = 172/339 (50%), Positives = 228/339 (67%), Gaps = 1/339 (0%)

Query: 1   MRKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATA 60
           +RKIIHVD DC++AA+EMRD P   G+P+AVGGS + RGVI+TCNYEAR +GVRSAM++ 
Sbjct: 3   LRKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPDHRGVIATCNYEARAYGVRSAMSSR 62

Query: 61  YAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSAT 120
           +A KLCPDL++V  R + Y++ S +I  IF  YTELIEPLSLDEAYLDVSD + + GSAT
Sbjct: 63  HALKLCPDLLIVKPRFEAYREASREIHTIFRDYTELIEPLSLDEAYLDVSDSQWYSGSAT 122

Query: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
            IAE IRR +     +T SAGVAP KFLAK+ASD  KPNG +VI P++V  F+  L + +
Sbjct: 123 RIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPNEVETFVAALPVAR 182

Query: 181 IPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRER 240
           + GVGKVTA+KL+ LG+ TC  ++ + +  L+  FG FG  L   A+GID+R +     R
Sbjct: 183 LHGVGKVTADKLTRLGIETCLHLREWSRLALVREFGSFGERLWGLARGIDERAVHNDSRR 242

Query: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTTI 300
           +SV VE T   D+  L  C   +P L+  L+ R++R     +  K  VK+KF DF QTT+
Sbjct: 243 QSVSVENTYDTDLPDLASCLARLPELLDSLNERIARMDSSYRPDKPFVKVKFHDFSQTTM 302

Query: 301 EHRSNDVSVMMFYELLAQAIARQDGRGIRLLGVAVGLSD 339
           E       +  + +LL QA AR  G+ +RLLGV V L D
Sbjct: 303 EQAGAGRDLESYRQLLGQAFAR-GGKPVRLLGVGVRLRD 340