Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 356 a.a., DNA polymerase IV from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  265 bits (678), Expect = 1e-75
 Identities = 164/366 (44%), Positives = 221/366 (60%), Gaps = 21/366 (5%)

Query: 1   MRKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATA 60
           MRKIIH+DMD +FA+VE RD PE RGKP+AVGGSR R GV++  +YEAR++GV SA+A+ 
Sbjct: 1   MRKIIHIDMDAFFASVEQRDNPELRGKPVAVGGSRAR-GVVAAASYEARKYGVHSALASK 59

Query: 61  YAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSAT 120
            A + CP LI V  R +VY  VS QIR IF  YT+L+EPLSLDEAYLDV++ K+   SA+
Sbjct: 60  IASQRCPHLIFVKARFEVYSAVSRQIREIFHAYTDLVEPLSLDEAYLDVTENKIGMPSAS 119

Query: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
           +IA  IR  IL ETGLTASAGV+  KFLAK+ASD+NKPNG  +I PD     +  L + +
Sbjct: 120 IIANEIRARILEETGLTASAGVSYNKFLAKIASDMNKPNGFTLITPDVAENLVAGLVIEK 179

Query: 181 IPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRER 240
             G+GKVTA K+ ++G+ T  D++   ++EL+  FGK G      A+  DDR +   R R
Sbjct: 180 FHGIGKVTAAKMQAMGILTGADLRQRTEEELVRHFGKVGRYYYRIARAQDDREVQPHRIR 239

Query: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELS---TRLSRSAKDRQIHKQVVKLKFSDFKQ 297
           KS+G E T   D+         +  L QE++    RL  +AK        +K+K+ DF Q
Sbjct: 240 KSIGSERTFDVDLVEEHDMLLQLDSLCQEVAQDMERLKVTAK-----TVTLKIKYFDFTQ 294

Query: 298 TT------IEHRSNDVSVMMFYELLAQAIARQDGRGIRLLGVAVGLSDKSLISEVDPLQT 351
            T       E  S D    +  +LL     +     +RLLGV+V     SL+ + D LQ 
Sbjct: 295 NTRSKTFLSEFSSADAMYTIVRDLL--RTPQLPLYPVRLLGVSV----SSLLYQHDRLQE 348

Query: 352 QLVLSI 357
              L++
Sbjct: 349 GYQLTL 354