Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 393 a.a., DNA polymerase IV from Magnetospirillum magneticum AMB-1

 Score =  220 bits (561), Expect = 4e-62
 Identities = 138/350 (39%), Positives = 198/350 (56%), Gaps = 11/350 (3%)

Query: 4   IIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAYAQ 63
           I H+D D ++A+VE RD P    KP+ VG    R GV++T  Y AR+FG RSAM    A 
Sbjct: 45  IAHIDCDAFYASVEKRDNPALADKPVIVGHPGGR-GVVTTACYVARKFGPRSAMPMFKAL 103

Query: 64  KLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSD-CKLHKGSATLI 122
           +LCP  +++P  +  YK VS+QIRA+F + T L+EPLSLDEAYLD+S   +L    A ++
Sbjct: 104 ELCPHAVVIPPNIAKYKQVSAQIRALFEKATPLVEPLSLDEAYLDLSPGVRLVDRPAAVL 163

Query: 123 AEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIP 182
              + R I  + G+T S G++  KFLAK+ASDLNKP G  VI  ++   F+    +  + 
Sbjct: 164 LARLARAIRLQVGITVSVGLSYNKFLAKMASDLNKPEGFSVIGREEAEAFLAPRPVTALF 223

Query: 183 GVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERKS 242
           G+G  TA +++  G+ T   +Q  P+ E + R+GKFG  L     GID R ++  R  KS
Sbjct: 224 GIGAATAARMADQGITTIAQLQALPETEFVARWGKFGRRLAGMVHGIDHRPVNPDRPAKS 283

Query: 243 VGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSR-SAKDRQIHKQVVKLKFSDFKQTTIE 301
           V  ETT A+DI   +   + +P L + ++ RL R +   R +   V+KLK +DFK  T  
Sbjct: 284 VSTETTFARDIRDAKALTEALPPLAEGVARRLERVNLAGRTV---VLKLKTADFKVITRH 340

Query: 302 HRSNDV---SVMMFYELLAQAIARQDGRGIRLLGVAVGLSDKSLISEVDP 348
            R  D    +  +    LA    + DGR  RLLG  +G++D     E DP
Sbjct: 341 LRLPDPTGRAETIVRAGLALLERQMDGRAFRLLG--IGVTDLCPAEEADP 388