Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 422 a.a., DNA polymerase IV from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  182 bits (461), Expect = 2e-50
 Identities = 117/339 (34%), Positives = 186/339 (54%), Gaps = 9/339 (2%)

Query: 4   IIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAYAQ 63
           I H+D D ++A+VE RD PE R KP+ VGG +  RGV+ST  Y AR++GV SAM    A 
Sbjct: 44  IAHMDCDAFYASVEKRDRPELRDKPVIVGGGK--RGVVSTACYVARQYGVGSAMPMFKAL 101

Query: 64  KLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDC-KLHKGSATLI 122
           K CP+ +++      Y   S +I     + T LI+PLSLDEA++D+S   +L+ G   L 
Sbjct: 102 KACPEAVVIRPDFTKYVFESQRILGALGQLTPLIQPLSLDEAWVDLSGTERLNGGPPALQ 161

Query: 123 AEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIP 182
               ++ I  ETGLT S G+AP +FLAK+AS+++KP G  V+        +    +  +P
Sbjct: 162 LIRFQKQIEEETGLTVSIGLAPNRFLAKMASEMDKPRGFSVVGAANAQALLAPRPVTALP 221

Query: 183 GVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERKS 242
           GVG V  + L S G +T GD+     ++L+ R+G+ G  L + A   D R ++  R+RK 
Sbjct: 222 GVGPVFGKALRSDGYSTIGDLARADVRDLVKRYGESGLRLHDLAHARDARAVNPERDRKG 281

Query: 243 VGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTTIEH 302
           +  ETT  +D+ + E  +  +  L ++L+++  R     ++   V+KL+ +DFK  T   
Sbjct: 282 MSAETTFNEDLTSAEALEAELWPLCEKLASKARRDGVASRV--LVLKLRRTDFKIVTRRV 339

Query: 303 RSND--VSVMMFYELLAQAIARQDGRGIRLLGVAVGLSD 339
              D   +    +      +  + GR  RL+G  +G++D
Sbjct: 340 TLPDPVQTARALFAAGRDLLKPELGRPYRLIG--IGMAD 376