Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 357 a.a., DNA polymerase IV from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  270 bits (689), Expect = 6e-77
 Identities = 159/339 (46%), Positives = 216/339 (63%), Gaps = 9/339 (2%)

Query: 2   RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAY 61
           RKI+HVDMD +FA+VE RD P  RG+P+AVG +  R GV++  +YEARRFGVRSAM +  
Sbjct: 7   RKIVHVDMDAFFASVEQRDDPSLRGRPVAVGHAAAR-GVVAAASYEARRFGVRSAMPSTT 65

Query: 62  AQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSATL 121
           AQ+ CPDL+ VP R  VY+ VS+QI AIF+ YT+LIEPLSLDEAYLDV+  +   G+A+ 
Sbjct: 66  AQRKCPDLVFVPPRFDVYRAVSAQIHAIFADYTDLIEPLSLDEAYLDVTADRRILGTASA 125

Query: 122 IAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQI 181
            AE IRR IL ETGLTASAG++  KFLAK+ASD NKPNGQ+V+ P +   F+  L +R+ 
Sbjct: 126 TAEEIRRRILEETGLTASAGISYNKFLAKLASDQNKPNGQFVVAPGRGEAFVEDLPVRRF 185

Query: 182 PGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERK 241
            GVG VTA K+  LG+ T  D++  P   L   FGK G      A+G DDR ++  R RK
Sbjct: 186 HGVGPVTAAKMEKLGIRTGADLRRQPLAFLQHHFGKSGPWYYAIARGEDDRPVNPDRTRK 245

Query: 242 SVGVETTLAQDIYTLEQCQQVMPGLIQELSTRLS-RSAKDRQIHKQVVKLKFSDFKQTTI 300
           S G ETT A D+   E  +  +  +  E+        ++ R +    VK+K++DF+Q+T 
Sbjct: 246 SSGSETTFASDLTEPEAIEAGVVAMADEVWAWCEIAGSRGRTV---TVKVKWADFQQSTR 302

Query: 301 EHR-SNDVSVMMFYELLAQAIARQ---DGRGIRLLGVAV 335
               S  V+       L++ + R      RG+RL+GV++
Sbjct: 303 SRSLSEPVASREALRDLSRLLVRSLYPPTRGVRLVGVSL 341