Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 357 a.a., DNA polymerase IV from Agrobacterium fabrum C58

 Score =  268 bits (686), Expect = 1e-76
 Identities = 169/364 (46%), Positives = 222/364 (60%), Gaps = 14/364 (3%)

Query: 1   MRKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATA 60
           MRKIIHVDMD ++A+VE RD PE RG+P+AVG S   RGV++  +YEAR FGVRSAM + 
Sbjct: 1   MRKIIHVDMDAFYASVEQRDNPELRGRPVAVG-SAAARGVVAAASYEAREFGVRSAMPSV 59

Query: 61  YAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSAT 120
            A + CPDLI VP R  VYK VS QIRAIF+ YT LIEPLSLDEAYLDV++       AT
Sbjct: 60  TAARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIAT 119

Query: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
            IA  IR  I   TGL ASAG++  KFLAK+ASDLNKPNGQ VI P   P F+  L++++
Sbjct: 120 EIASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLAVKK 179

Query: 181 IPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRER 240
             GVG  TAEK+   G+ T  D+++   Q L   FGK GA     A+GID+R +   R R
Sbjct: 180 FHGVGPATAEKMHRFGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPDRIR 239

Query: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQ--VVKLKFSDFKQT 298
           KSVG E T + DI  L+    +    ++ L+ ++    + +++  +   VK+K+SDF Q 
Sbjct: 240 KSVGAEDTFSVDINDLD----LATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYSDFTQA 295

Query: 299 TIEHRSNDVSVMMFYELLAQAIA-----RQDGRGIRLLGVAVGLSDKSLISEVDPLQTQL 353
           T   R++ + V    E+L  A A         R +RLLGV +        +E D  Q QL
Sbjct: 296 T-RSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQEAE-DEEQPQL 353

Query: 354 VLSI 357
            L++
Sbjct: 354 DLAL 357