Pairwise Alignments

Query, 399 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 413 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Serratia liquefaciens MT49

 Score =  553 bits (1424), Expect = e-162
 Identities = 276/412 (66%), Positives = 314/412 (76%), Gaps = 13/412 (3%)

Query: 1   MSLKDFFERIEPDFEKGGKYEKFYALFEAAYTIFYTPGKVNNGKTHVRDNLDLKRMMITV 60
           M LK+FF++IE  F  GGK EK+Y LFEA  T+FYTPG V  G +HVRD +DLKRMMI V
Sbjct: 1   MGLKNFFDKIEHHFTPGGKLEKWYPLFEATTTVFYTPGLVTRGASHVRDAIDLKRMMILV 60

Query: 61  WACAFPAMFVGMYNVGLQAQIALVAGFATPDV-------WQVSLFSMFGTELTANSGWPA 113
           W   FPAMF GMYNVG QA  AL   ++   +       W   L    G  L A++GW +
Sbjct: 61  WLAVFPAMFWGMYNVGQQAIPALHHLYSGDQLQQVLAGDWHYRLAQWLGASLAADAGWVS 120

Query: 114 LMWYGACFFLPIYAVTFAVGGIWEVLFAAIRGHEVNEGFFVTSILFALTLPPTIPLWMVA 173
            M  GAC+FLPIYAV F VGG WEVLFA IR HE+NEGFFVTSILFAL +PPT+PLW  A
Sbjct: 121 KMVLGACYFLPIYAVVFLVGGFWEVLFAIIRKHEINEGFFVTSILFALIVPPTLPLWQAA 180

Query: 174 MGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPLNMSGDTSWVVADGYSGATALSQ 233
           +GITFGVVVAKE+FGGTGRNFLNPALAGRAFLFFAYP  +SGD  W  ADG+SGAT L+Q
Sbjct: 181 LGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTSADGFSGATPLAQ 240

Query: 234 AAAGSLDYAFNQ------NWWDAFFGFIPGSVGEVSTLAILLGGLVIIYTRIASWRIVGG 287
            +AG      N       +W DAF G IPGSVGEVSTL ILLGG +I++ R+ASWRIV G
Sbjct: 241 WSAGGAHSLSNVATGQSISWMDAFLGNIPGSVGEVSTLMILLGGAIILFGRVASWRIVAG 300

Query: 288 VMVGMIAISTLLNVVGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTNQAKWAY 347
           VM+GM+A + L N +GS TNP+FAMPWYWHLVLGGFAFGM+FMATDPVSASFTN+ KW Y
Sbjct: 301 VMLGMMATAFLFNSIGSTTNPLFAMPWYWHLVLGGFAFGMIFMATDPVSASFTNKGKWWY 360

Query: 348 GFLIGAMAVFIRVINPAFPEGMMLAILFANLFAPLFDHFVVQANIKRRIARG 399
           G LIG M V IRV+NPA+PEGMMLAILFANLFAPLFD+ VVQANIKRR ARG
Sbjct: 361 GILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKARG 412