Pairwise Alignments

Query, 399 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 352 a.a., electron transport complex subunit RsxD from Escherichia coli ECOR27

 Score =  114 bits (286), Expect = 3e-30
 Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 56/327 (17%)

Query: 105 LTANSGWPALMWYGACFFLPIYAVTFAVGGIWEVLFAAIRGHEV-----NEGFFVTSILF 159
           L A  G  A +W+     L    +      + E L   +R   V     +    +T +L 
Sbjct: 26  LAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLL 85

Query: 160 ALTLPPTIPLWMVAMGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPLNMSGDTSW 219
           A+++PP  P WMV +G  F V++AK+++GG G+N  NPA+ G   L  ++P+ M   TSW
Sbjct: 86  AVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQM---TSW 142

Query: 220 VVA-----------------------------------DGYSGATAL-----SQAAAGSL 239
           +                                     DG S AT L     S  A  S+
Sbjct: 143 LPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSV 202

Query: 240 DYAFNQNWWDAFFGFIPGSVGEVSTLAILLGGLVIIYTRIASWRIVGGVMVGMIAISTLL 299
           +       +  + G + G+  +   LA L GGL +++ +   W I    +V +   +TL 
Sbjct: 203 EQIMQ---YPIYSGILAGAGWQWVNLAWLAGGLWLLWQKAIRWHIPLSFLVTLALCATLG 259

Query: 300 NVVGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTNQAKWAYGFLIGAMAVFIR 359
            +   +T    A P   HL+ G    G  F+ TDPV+AS TN+ +  +G L G +   IR
Sbjct: 260 WLFSPET---LAAPQI-HLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIR 315

Query: 360 VINPAFPEGMMLAILFANLFAPLFDHF 386
                +P+G+  A+L AN+  PL D++
Sbjct: 316 SFG-GYPDGVAFAVLLANITVPLIDYY 341