Pairwise Alignments

Query, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 332 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score = 81.3 bits (199), Expect = 4e-20
 Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 14/272 (5%)

Query: 111 DVALVLMKLPKNLTYFAHQLMRLSQILPAGCRVLVGAKAKSINSSLLALFA----KHLGP 166
           D A++ +   K+LT +   L  ++  LPA    LVG K   I S+   +      + L  
Sbjct: 69  DAAVIFLPKSKDLTDYL--LNAVAARLPAAELFLVGEKKAGIESAAKQMIPFGKPRKLDN 126

Query: 167 ANASLAWKKTRVITCISDGKPRALPNGITWNIPEFNLTISNLSNVFAANKLDIGARIMLD 226
           A     W+ T V       +  +L       + E  L + +L  VF+  +LD G  ++L+
Sbjct: 127 ARHCQLWQVT-VANAPQAVELESLAQVFEVPLAEGPLKVLSLPGVFSHGRLDRGTELLLE 185

Query: 227 NLPQGKFNTVVDLGCGNGVLGLRAAQLYPNADIHFIDDSEMAVASAKANWTMNQLAEGKG 286
           +L +     ++D GCG GVLG    + YP+  +  +D    A AS++     N L   + 
Sbjct: 186 HLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTMLDVDAFAAASSRLTLAANGL---EA 242

Query: 287 HFHWDDCMTHLPEDIEPDLVLCNPPFHQGEAITDHIAWQMFL-DARRRLKNGGILHIVGN 345
                D +   P  +  + +L NPPFH G   TD+ A +  L  A + L  GG L +V N
Sbjct: 243 EVLTGDGIDAAPMGL--NAILSNPPFHVG-VHTDYFATENLLRKAAKHLAKGGELRLVAN 299

Query: 346 RHLAYHVKLQRLFKNCTTVASNGKFVILQAQK 377
             L Y   ++     C   A    F I +A++
Sbjct: 300 SFLKYQPLIEEHLGVCAIKAEGNGFRIYRAKR 331