Pairwise Alignments

Query, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 332 a.a., 16S rRNA m(2)G 1207 methyltransferase from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 22/269 (8%)

Query: 119 LPKNLTYFAHQLMRLSQILPAGCRVLVGAKAKSINSSLLALF----AKHLGPANASLAWK 174
           LPK      + L  L+  L      LVG K   I ++   L     A+ L  A     W+
Sbjct: 75  LPKARDLTDYLLNALASRLAGRELFLVGEKRGGIEAAAKQLSPFGRARKLDSARHCQLWQ 134

Query: 175 KT-----RVITCISDGKPRALPNGITWNIPEFNLTISNLSNVFAANKLDIGARIMLDNLP 229
            T     + ++  S  +P  +       + +  LT+ +L  VF+  +LD G+ ++L+N+ 
Sbjct: 135 VTVEHAPQAVSLDSLARPYQI------ELQDGPLTVVSLPGVFSHGRLDRGSALLLENID 188

Query: 230 QGKFNTVVDLGCGNGVLGLRAAQLYPNADIHFIDDSEMAVASAKANWTMNQLAEGKGHFH 289
           +     ++D GCG GVLG    + YP+ ++  +D    A AS++     N L   +    
Sbjct: 189 KLPSGNLLDFGCGAGVLGAAIKRRYPHNEVIMLDVDAFATASSRLTLAANGL---QAQVL 245

Query: 290 WDDCMTHLPEDIEPDLVLCNPPFHQGEAITDHIAWQMFL-DARRRLKNGGILHIVGNRHL 348
             D +   P  +  + +L NPPFH G   TD++A +  L  AR+ LK+GG L +V N  L
Sbjct: 246 TGDGIDAAPMGL--NTILSNPPFHVG-VHTDYMATENLLRKARQHLKSGGELRLVANNFL 302

Query: 349 AYHVKLQRLFKNCTTVASNGKFVILQAQK 377
            Y   ++     C   A    F I  A++
Sbjct: 303 RYQPLIEEHVGQCEVRAQGNGFKIYSAKR 331