Pairwise Alignments

Query, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 332 a.a., Ribosomal RNA small subunit methyltransferase C from Pseudomonas sp. DMC3

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 79/273 (28%), Positives = 121/273 (44%), Gaps = 16/273 (5%)

Query: 111 DVALVLMKLPKNLTYFAHQLMRLSQILPAGCRVLVGAKAKSIN--SSLLALFAK--HLGP 166
           D A+V +   K+LT +   L  ++  L      LVG K   I   S  L  F K   L  
Sbjct: 69  DSAVVFLPKSKDLTDYI--LNAVASRLAGREVFLVGEKRSGIEGASKQLNPFGKPRKLDS 126

Query: 167 ANASLAWKKTRVITCISDGKP-RALPNGITWNIPEFNLTISNLSNVFAANKLDIGARIML 225
           A     W+ T  +    + KP  +L       + E  L + +L  VF+  +LD G+ ++L
Sbjct: 127 ARHCQLWQVT--VANAPEAKPLESLAQTYELPLAEGPLKVISLPGVFSHGRLDRGSALLL 184

Query: 226 DNLPQGKFNTVVDLGCGNGVLGLRAAQLYPNADIHFIDDSEMAVASAKANWTMNQLAEGK 285
           ++L +     ++D GCG GVLG    + YP+  +  +D    A AS++     N L   +
Sbjct: 185 EHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNQVTLLDVDAFAAASSRLTLAANGL---E 241

Query: 286 GHFHWDDCMTHLPEDIEPDLVLCNPPFHQGEAITDHIAWQMFL-DARRRLKNGGILHIVG 344
                 D +   P  +    +L NPPFH G   TD+ A +  L  A + LKNGG L +V 
Sbjct: 242 AEVLTGDGIDAAPMGL--SAILSNPPFHVG-VHTDYFATENLLRKAAKHLKNGGELRLVA 298

Query: 345 NRHLAYHVKLQRLFKNCTTVASNGKFVILQAQK 377
           N  L Y   ++     C   A    F I +A++
Sbjct: 299 NSFLKYQPLIEEHLGVCAIKAEGNGFRIYRAKR 331