Pairwise Alignments

Query, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 342 a.a., Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 87.0 bits (214), Expect = 7e-22
 Identities = 84/316 (26%), Positives = 132/316 (41%), Gaps = 32/316 (10%)

Query: 71  PLRVETDARTSFLGTEQNHHRNQLPM---DNLQW-FTSRDTLPKDVALVLMKLPKNLTYF 126
           P R E  A  +   T+Q HH   L     DN+++   ++ +   D   ++   PKN    
Sbjct: 34  PARFECAASRAH--TQQFHHWQVLSRQMGDNVRFSLVAQASDVADCDTLIYYWPKNKPEA 91

Query: 127 AHQLMRLSQILPAGCRVLVGAKAKSINSSLLALFAKHLGPANASLAWKKTRVITCISDGK 186
             QLM +  ++P+G  V V  + +S   S   + A +  P N   + ++  +     + +
Sbjct: 92  QFQLMNILSLMPSGVDVFVVGENRSGVRSAEPMLADY-APLNKVDSARRCGLYHGRLEKQ 150

Query: 187 PRALPNGITWNIPEFNLTISNLSNVFAANKLDIGARIMLDNLPQGKFNTVVDLGCGNGVL 246
           P+              LTI  L  VF+ + LD+G++++L  L       V+D+GCG GVL
Sbjct: 151 PQFSLESWWAEYNIDGLTIKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVL 210

Query: 247 GLRAAQLYPNADIHFIDDSEMAVASAKANWTMNQL----------AEGKGHFHWDDCMTH 296
               A   P   +   D S  AV +++A    N L          +E KG F        
Sbjct: 211 SAALASHSPKVRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFSEVKGRF-------- 262

Query: 297 LPEDIEPDLVLCNPPFHQGEAITDHIAWQMFLDARRRLKNGGILHIVGNRHLAYHVKLQR 356
                  D+++ NPPFH G   +   A  +   A R L +GG L IV N  L Y   L  
Sbjct: 263 -------DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPKILDE 315

Query: 357 LFKNCTTVASNGKFVI 372
            F     +A  G+F +
Sbjct: 316 TFGFHEVIAQTGRFKV 331