Pairwise Alignments

Query, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 343 a.a., 16S rRNA m(2)G1207 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 86/321 (26%), Positives = 134/321 (41%), Gaps = 36/321 (11%)

Query: 71  PLRVETDARTSFLGTEQNHHRNQLPM---DNLQWF---TSRDTLPKDVALVLMKLPKNLT 124
           P R++T A  +   T+Q HH   L     DN ++    T+ D    D  +     PKN  
Sbjct: 34  PARLDTAASRAH--TQQFHHWQVLSRQMGDNARFSLVATADDVADCDTLIYYW--PKNKP 89

Query: 125 YFAHQLMRLSQILPAGCRVLVGAKAKSINSSLLALFAKHLGPANASLAWKKTRVITCISD 184
               QLM L  +LP G  + V  + +S   S   + A +  P N   + ++  +     +
Sbjct: 90  EAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEQMLADY-APLNKVDSARRCGLYFGRLE 148

Query: 185 GKPRALPNGITWNIPEFNLTISNLSNVFAANKLDIGARIMLDNLPQGKFNTVVDLGCGNG 244
            +P               LT+  L  VF+ + LD+G++++L  L       V+D+GCG G
Sbjct: 149 KQPVFDAEKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAG 208

Query: 245 VLGLRAAQLYPNADIHFIDDSEMAVASAKAN----------WTMNQLAEGKGHFHWDDCM 294
           VL +  A+  P   +   D S  AV +++A           +  N  +E KG F      
Sbjct: 209 VLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF------ 262

Query: 295 THLPEDIEPDLVLCNPPFHQGEAITDHIAWQMFLDARRRLKNGGILHIVGNRHLAYHVKL 354
                    D+++ NPPFH G   +   A  +   A R L +GG L IV N  L Y   L
Sbjct: 263 ---------DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVL 313

Query: 355 QRLFKNCTTVASNGKFVILQA 375
              F     +A  G+F + +A
Sbjct: 314 DETFGFHEVIAQTGRFKVYRA 334