Pairwise Alignments

Query, 226 a.a., amino acid ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  157 bits (397), Expect = 2e-43
 Identities = 79/200 (39%), Positives = 132/200 (66%)

Query: 27  GLKVTLIVTFFAMLLGAVLGVGTTLMKMSSKWYIRFPAELYVGVIRGTPVVVQLVILYFI 86
           GL  TL ++  + +LG ++G+ T L ++SS   +R  + +YV ++RGTP++VQ+ I YF 
Sbjct: 120 GLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDLSTIYVELVRGTPLLVQIFIFYFF 179

Query: 87  VLAALDVDKITAAIIAFGLNSGAYISEIIRAGIQAVDKGQTEAARSLGLSQAMTMKLIIL 146
           +   L++ +  A I A  L +GAY++EI+RAG+Q++ +GQ EAARSLGLS + +M+ ++L
Sbjct: 180 IGTVLNLSREFAGIAALSLFTGAYVAEIVRAGVQSITRGQNEAARSLGLSASQSMRHVVL 239

Query: 147 PQAIKNILPALGNEFIVLLKETAVIGFIGGVDLMRAGEIIRSRTFEDSVPLFTCALIYLF 206
           PQA K +LP L  +FI L+K+T+++  I   +L+++G  + + +F     LF  A +YL 
Sbjct: 240 PQAFKRVLPPLAGQFISLVKDTSLVSVIAITELLKSGREVITTSFSPFEILFCVAGLYLL 299

Query: 207 LTYSFTFMLSKFEKRLKQSD 226
           +    + M S+ E+RL QSD
Sbjct: 300 INLPLSKMASRLERRLAQSD 319