Pairwise Alignments

Query, 226 a.a., amino acid ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 258 a.a., polar amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  159 bits (403), Expect = 4e-44
 Identities = 94/215 (43%), Positives = 128/215 (59%), Gaps = 13/215 (6%)

Query: 25  LNGLKVTLIVTFFAMLLGAVLGVGTTLMKMSSKWYIRFPAELYVGVIRGTPVVVQLVILY 84
           L GL +T ++   AMLLG VLG+   L+++S    +  P   YV ++RGTP++VQ+V LY
Sbjct: 20  LTGLWLTCLIAVSAMLLGCVLGLAAALLRLSKNPLLHLPVRFYVWLMRGTPLLVQIVFLY 79

Query: 85  FIVLAA-----LDVD--------KITAAIIAFGLNSGAYISEIIRAGIQAVDKGQTEAAR 131
             + A       D+D         I AAIIA GLN GAY++EIIRAGI AVDKGQ EA R
Sbjct: 80  TALAAGGIFRFEDIDLFGLVVPGNIQAAIIALGLNEGAYMAEIIRAGIGAVDKGQYEAGR 139

Query: 132 SLGLSQAMTMKLIILPQAIKNILPALGNEFIVLLKETAVIGFIGGVDLMRAGEIIRSRTF 191
           SLG+  A  M+ I+LPQA + I+P LGNEF V+LK T ++  IG  +L+ + +++ S TF
Sbjct: 140 SLGMGFAKLMRRIVLPQAFRVIVPPLGNEFNVMLKNTTLVSVIGVQELLLSTQMVTSATF 199

Query: 192 EDSVPLFTCALIYLFLTYSFTFMLSKFEKRLKQSD 226
                    A+ +L LT  + F     E R  QSD
Sbjct: 200 RVFELYLVVAIYFLMLTTLWGFFQRWLEARFGQSD 234