Pairwise Alignments

Query, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  181 bits (459), Expect = 3e-50
 Identities = 114/305 (37%), Positives = 171/305 (56%), Gaps = 28/305 (9%)

Query: 79  IVMELRLPRILLAFVAGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVMLTLFSG 138
           +V   RL R L+A   GAGL+  G +LQ++ RNPLADPYL GIS+GAS GAV++  +  G
Sbjct: 53  VVWNYRLTRALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALIGVG 112

Query: 139 SGFFANAGVIANSGIFSGAEILAGLQWFSLPFGAFIGASLS-VLIVLALSGLGLNSQVER 197
            G                          SL  GAF+GA  +  L++L     G  S   +
Sbjct: 113 GGLI------------------------SLSAGAFVGAMAAFALVILLARASGSASGTGQ 148

Query: 198 MLLSGVATSFMFGALTSLLLY-FASPQATASVLFWSLGSFAKASWSLLILPTIVVLVSFF 256
           ++L+G+A S +F ALT+ L+   AS +    +LFW LG+ +   W  + L   V +    
Sbjct: 149 IILAGIAGSQLFNALTAFLITKSASSEQARGILFWLLGNLSGVRWPSVWLAVPVAVAGLA 208

Query: 257 IILGWKRQIMALQAGDETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVGLMIPH 316
           + L  +R + A   G ++A +LG+ V +++  ++   +L+TA++V+  G IGFVGL+IPH
Sbjct: 209 VCLWHRRALDAFTFGSDSAASLGIPVRRVQFVLVGCAALVTAVMVSIVGSIGFVGLVIPH 268

Query: 317 TVRLLFPGRQPILL--TALVGGLFMVWIDVLARCLLGNQELPVGIITASIGSFFFLLILR 374
            VRLL       LL  +AL G LF++  DVL+R L+  Q +PVG++TA +G+  F LIL 
Sbjct: 269 AVRLLLGTGHSRLLPASALGGALFLIAADVLSRTLIKGQVIPVGVVTALVGAPVFALILI 328

Query: 375 RRKVA 379
            R+ A
Sbjct: 329 GRRNA 333