Pairwise Alignments

Query, 310 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 323 a.a., LysR substrate-binding domain-containing protein from Paraburkholderia sabiae LMG 24235

 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 40/272 (14%)

Query: 2   LNQQWLATFVTLVEVGHFTHTANKLFMTQPGVSQHIKKLEEQVGVHLLLRKGKRFELTEA 61
           L  + L  F    + G F   A  L +TQP VS  IK+LEE +G+ L  R G+R  LTEA
Sbjct: 8   LTLRQLQIFAAAAQYGSFARAAEVLHLTQPAVSMQIKQLEEAIGLALFERVGRRIALTEA 67

Query: 62  GAILYQHARQ----YQLAETELLARLQTDNTYVGECRFGCSGAIASLLYPHFLERQI--- 114
           GA L  HA++     + A+  + A    D   V        G +++  Y  F+ RQI   
Sbjct: 68  GATLSHHAKRILGDIRDADDAMRALSSADGGTVS------VGLVSTARY--FVPRQISRY 119

Query: 115 --QYPELCVKIEAAPNQRIVSGILTNQLDMGIVTKRGEEADLTYQALGYAELSLVLPSQY 172
             ++P++ +    A    ++  +  N +D+ ++ +   E D   + L Y    +   + +
Sbjct: 120 AERHPKVDIHFSIANRDTLLRQLQDNAIDLAVMGRPSVELDAHCEPLAYNPHVIAASTTH 179

Query: 173 LVDKIGIELLEQIGFIDHPDGDYYLQQVLQANFGGRAPMVNSRTGSPVKAHTMAFTHHI- 231
                         F+D    D  L ++    F  R P     +G+   A+ M F  H+ 
Sbjct: 180 -------------PFVDAAHFD--LHELRHDTFLMREP----GSGTAAVANEM-FRQHLF 219

Query: 232 --RRTGYVNQLSQILLPVAKGLGFTVLPLSTV 261
              RT  ++    +   V  G+G ++LPL T+
Sbjct: 220 TPARTLALDSHETVKQAVVAGMGVSLLPLHTL 251