Pairwise Alignments

Query, 398 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 481 a.a., Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain from Variovorax sp. SCN45

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 56/315 (17%)

Query: 81  ERGKPLLELQKGEGISKDSRFVMASLSKQITATLILQAVDAGKLDLTQTLNHYLVGDAKG 140
           ++G  + +++  E ++ +++F++ S++K +TA  +   +D G+L+               
Sbjct: 34  QKGYGVRDMRGAEPVTPETQFLLCSITKSLTAAGLGLLIDEGRLEW-------------- 79

Query: 141 DNKALKAVVAGTNSSANALNPGRYDERITLHQLLTHTSGVDK---------LGKANRF-- 189
            N+ ++ V+         L+     ER+T+  LL H SG+ +         LG A     
Sbjct: 80  -NRPVREVIPEFR-----LHDALATERLTVRDLLCHRSGLPRHDWVHMPGDLGGAQMLPL 133

Query: 190 --------EPGSQFEYSNLGYSLLGQVLEKVNHQSFAEQVAQFATRYQLNGLS-AELG-S 239
                   E    F+YSNLGY + G V E+++ Q + +    F T   L  L   + G +
Sbjct: 134 LRHLAPSRELRDTFQYSNLGYMVAGMVTERISGQRWED----FTTERLLKPLGFKDFGFT 189

Query: 240 VAAIHTKVPSLAVGLQESEVIAPSDLVLDEALLPAGGL---IASAPAYAAF---QQQLHA 293
           + A+     +        +   PS L         GG+   +A    +A F   + +++ 
Sbjct: 190 IEALEAADNAARPHAMVGDECVPSPL-WPIRTTAGGGMNVSLADIAKWARFLLDEGKVNG 248

Query: 294 GKLLSAESYQWMTTAHTEI----QFLWPNMHYGYGVRINKDDSLIEYSHTGYLTGYMSMT 349
            +LLSA+S + M T H  +         + HYG+G+          Y+H+G   G+ ++ 
Sbjct: 249 AQLLSAKSLREMCTPHVHMGRSEHAEIGDSHYGFGLFCENYRGDRTYAHSGSWLGWGTLM 308

Query: 350 LHYPEFNVNLVMLEN 364
              PE    +V+L N
Sbjct: 309 TVVPERRTAVVVLTN 323