Pairwise Alignments

Query, 405 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 366 a.a., ferredoxin from Pseudomonas simiae WCS417

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 46/202 (22%), Positives = 102/202 (50%), Gaps = 13/202 (6%)

Query: 205 EDVLRAYSMANYPDEKGRIMLNVRIATPPSANVPPGKMSSYIFN-LKAGDKVTISGPFGE 263
           + ++R+Y++++ P       + ++        VP GK+S+++ + L  G ++ + GP G 
Sbjct: 63  QPIMRSYTISSSPSVPYSFSVTIK-------RVPGGKVSNWLHDTLHEGQELAVHGPVGL 115

Query: 264 FFVKDTDA-EMVFIGGGAGMAPMRSHIFDQLKSKKTKRKMSFWYGARSTREVFYQQDFDT 322
           F   D  + +++++ GG G+ P+ S +            M+F + ARS +++ Y ++ + 
Sbjct: 116 FNAIDFPSPKVLYLSGGVGITPVMS-MARWFYDTNANVDMTFIHSARSPKDIIYHRELEH 174

Query: 323 LAAENDNFVWHVALSEPLPEDNWTGYTGFIHNVLYENYLKNHKAPEDCEFYMCGPPIMNS 382
           +A+  DNF  H+   +    + W GY G++++ + E  + +     + E + CGP    +
Sbjct: 175 MASRIDNFSLHLICEKHGLGEPWAGYRGYLNHKMLELMVPDFL---EREVFCCGPTPYMN 231

Query: 383 SVIKMLESLGVEPENILLDDFG 404
           +V ++LE  G +      + FG
Sbjct: 232 AVKRLLEVAGFDMTRYHEESFG 253



 Score = 51.2 bits (121), Expect = 5e-11
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 44  KSIKVAAGDKLLGALASKNIFIPSACGGGGTCGQCRVKVKSGGGDILPTELGHITKKEAK 103
           KSI+VA G+ +  A A   + IP AC G G CG C  KV   GG++     G IT+++  
Sbjct: 291 KSIRVAPGETVHAAAAKLGLLIPKAC-GMGICGTC--KVMKLGGEVEMEHNGGITEEDEA 347

Query: 104 EGCRLACQVAVKTDMELE 121
           EG  L+C    K D+ +E
Sbjct: 348 EGYILSCCSVPKGDVRIE 365