Pairwise Alignments

Query, 405 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 329 a.a., Probable ferredoxin oxidoreductase oxidoreductase protein (EC 1.-.-.- ) from Variovorax sp. SCN45

 Score = 71.6 bits (174), Expect = 3e-17
 Identities = 87/367 (23%), Positives = 148/367 (40%), Gaps = 59/367 (16%)

Query: 44  KSIKVAAGDKLLGALASKNIFIPSACGGGGTCGQCRVKVKSGGGDILPTELGHITKKEAK 103
           ++++V  G  LL  L   ++ +  +C  G  CG CR KV SG   +L      I      
Sbjct: 10  RTLEVRPGANLLEVLREHHVPVSYSCMSG-RCGTCRCKVVSG--QVLDGGQDAIRPDGQG 66

Query: 104 EGCRLACQVAVKTDMELELEEE----IFGVKKWQCEVISNDNKATFIKELLLKLPEGEDV 159
           E   LACQ  +     +E+ E     +   +  +  V   D     I+ L LK    + +
Sbjct: 67  ERYVLACQSTLTESCAIEIPEPDEVVVHPARILKATVTGIDELTHDIRRLRLK--PNKPL 124

Query: 160 HFKAGGYIQIE-APAHVVKYADFDIPAKYRDDWEKYGLFDLVSTVNEDVLRAYSMANYPD 218
            F  G Y Q++ AP                                 D+ R YSMA    
Sbjct: 125 EFSPGQYAQLQFAP---------------------------------DLARPYSMAGLSR 151

Query: 219 EKGRIMLNVRIATPPSANVPPGKMSSYIFN-LKAGDKVTISGPFGEFFVKDTD-AEMVFI 276
           +   +  +VR        VP G+++++IF  L+ GD V +SGP G  +++      M+  
Sbjct: 152 D-AELEFHVR-------RVPGGRVTAHIFEQLRVGDSVRVSGPLGTAYLRTKHRGPMLCA 203

Query: 277 GGGAGMAPMRSHIFDQLKSKKTKRKMSFWYGARSTREVFYQQDFDTLAAENDNFVWHVAL 336
            GG G+AP+ S +   + +  T+  +  + G RS  +V+   +   L A +     HV +
Sbjct: 204 AGGTGLAPILSIVRGAIATGLTQ-PIHLYLGVRSDADVYGLHELRELQALHPGLNVHVVV 262

Query: 337 SEPLPEDNWTGYTGFIHNVLYENYLKNHKAPEDCEFYMCGPPIMNSSVIKMLESLGVEPE 396
                  N +   G I + +  ++     + +    Y+CG P M  +V +++   G+ PE
Sbjct: 263 VTG--PANGSRRVGLITDAIRADW---PGSLDGWRAYLCGSPPMVEAVTQLVRGRGLAPE 317

Query: 397 NILLDDF 403
               D F
Sbjct: 318 QTHADAF 324