Pairwise Alignments

Query, 405 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 678 a.a., Oxidoreductase, FAD-binding from Pseudomonas putida KT2440

 Score = 63.5 bits (153), Expect = 2e-14
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 207 VLRAYSMANYPDEKGRIMLNVRIATPPSANVPPGKMSSYIFNLKAGDKVTISGPFGEFFV 266
           ++R YS+++ PD+ G + ++V+   P S  +           + AGD + +  P G F +
Sbjct: 377 LIRTYSLSSAPDD-GFLRISVKAQGPASRYLHE--------RVVAGDVLNVRPPMGSFTL 427

Query: 267 -KDTDAEMVFIGGGAGMAPMRSHIFDQLKSKKTKRKMSFWYGARSTREVFYQQDFDTLAA 325
            + +   +V IG G G+ P+ + +  QL++ + +R +  ++GARS  ++ +QQ+   L  
Sbjct: 428 DQQSTRPLVLIGAGVGITPLLAMLRQQLRTGQARR-IHLFHGARSLADLPFQQELAALRQ 486

Query: 326 E-NDNFVWHVALSEPLPEDNWTGYTGFIHNVLYENYLKNHKAPEDCEFYMCGPPIMNSSV 384
           +  D    H ALS+P           F   +  E  +K   A +D +FY+CGP      +
Sbjct: 487 QAGDLLQVHRALSQPEGHAQVGRDYEFAGRLGIEQ-VKATLALDDYDFYLCGPGSFTQQL 545

Query: 385 IKMLESLGVEPENILLDDFG 404
            + L  + V    I  + FG
Sbjct: 546 YEGLRGVHVPDARIHAEAFG 565



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 44  KSIKVAAGDKLLGALASKNIFIPSACGGGGTCGQCRVKVKSG 85
           K  +   G   L  LA      P     GG+CG C+ ++ SG
Sbjct: 599 KEARWVPGSGTLLELAEARGLAPEFSCRGGSCGTCKTRLVSG 640