Pairwise Alignments

Query, 405 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 392 a.a., Flavohemoprotein from Pseudomonas putida KT2440

 Score = 54.3 bits (129), Expect = 6e-12
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 240 GKMSSYIFN-LKAGDKVTISGPFGEFFVKDTDAEMVFIGGGAGMAPMRSHIFDQLKSKKT 298
           GK+S+Y+ + LK GD + +  P G+F +  +D  +V I GG G+ P  + +   L   +T
Sbjct: 228 GKVSNYLHDELKVGDTLQLFPPAGDFTLAASDKPLVLISGGVGITPTLAMLQAAL---QT 284

Query: 299 KRKMSFWYGARSTREVFYQQDFDTLAAENDNFVWHVALSEPLPEDNWTGYTGFIHNVLYE 358
           +R++ F + AR+     ++   D LAA +         +EP          G +   L  
Sbjct: 285 RREVHFIHCARNGAVHAFRDWIDGLAARHPQLKRFYCYAEP-EGGAAADAVGLLSEDLLA 343

Query: 359 NYLKNHKAPEDCEFYMCGPPIMNSSVIKMLESLGVEPENILLDDFG 404
            +L   +   D + Y  GP    ++V + L+ LGV  +    + FG
Sbjct: 344 EWLPQER---DVDAYFLGPKGFMAAVKRQLKGLGVPEQQSRYEFFG 386