Pairwise Alignments

Query, 405 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 368 a.a., putative glycine-betaine dioxygenase subunit from Pseudomonas putida KT2440

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 207 VLRAYSMANYPDEKGRIMLNVRIATPPSANVPPGKMSSYIFN-LKAGDKVTISGPFGEFF 265
           V+R+Y++++ P       + V+        VP G +S+++ + +  G ++ + GP G F 
Sbjct: 67  VMRSYTISSSPSVPYSFSITVK-------RVPGGLVSNFLHDTMHEGAELPVHGPVGLFN 119

Query: 266 VKDTDA-EMVFIGGGAGMAPMRSHIFDQLKSKKTKRKMSFWYGARSTREVFYQQDFDTLA 324
             D  A +++++ GG G+ P+ S +            M F + ARS +++ Y ++ + +A
Sbjct: 120 AIDFPAGKVLYLSGGVGITPVMS-MARWFYDTNANVDMVFVHSARSPKDIIYHRELEQMA 178

Query: 325 AENDNFVWHVALSEPLPEDNWTGYTGFIHNVLYENYLKNHKAPEDCE--FYMCGPPIMNS 382
           +   NF  H+   +    + W GY G+++  L E       AP+  E   + CGP    +
Sbjct: 179 SRIPNFSLHIICEKHGLGEPWAGYRGYLNQRLMELI-----APDYMERVVFCCGPTPYMT 233

Query: 383 SVIKMLESLGVEPENILLDDFG 404
           +V +MLE++G + +N   + FG
Sbjct: 234 AVKRMLEAVGFDMKNYHEESFG 255



 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 42  AEKSIKVAAGDKLLGALASKNIFIPSACGGGGTCGQCRVKVKSGGGDILPTELGHITKKE 101
           +EKSI++A G+ +  A A   + IP AC G G CG C  KV   GG++     G IT+++
Sbjct: 291 SEKSIRIAPGETVHAAAAKVGLMIPKAC-GMGICGTC--KVLKLGGEVEMEHNGGITEED 347

Query: 102 AKEGCRLACQVAVKTDMELE 121
             EG  L+C    K D+ ++
Sbjct: 348 EAEGYILSCCSVPKGDVRID 367