Pairwise Alignments

Query, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 223 a.a., electron transport complex subunit E from Magnetospirillum magneticum AMB-1

 Score =  105 bits (261), Expect = 8e-28
 Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 14/203 (6%)

Query: 4   SLSMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIR 63
           S S   ++   ++ NN V   +LG+C  +A++ +    + M LA   V+  SNL+++  R
Sbjct: 2   SASYGRIIKDGLWENNGVLCMLLGMCPTMAMTGTATNGLGMGLATAAVMAASNLMVAMFR 61

Query: 64  NFIPNSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAM 123
           N++ + VRI   + ++A+ V  VD+ +    +EL K L +F+ LI++NC+ + R EAFA 
Sbjct: 62  NYVTHEVRIPVYILIVAANVTFVDLGMNAWMHELYKVLGLFIPLIVSNCLPLARLEAFAA 121

Query: 124 KYPPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLFGHSVLTTVENGGW-------YL 176
           K P   + +D +    G+ L L ++  VRE++G G LF  + L     G W        +
Sbjct: 122 KEPVLPSFLDGLFMGLGFTLALTAIGAVREMIGQGTLFADAALLL---GPWAKLLELRVM 178

Query: 177 PNE----MFKLPPSAFFLIGLLI 195
           P +    +  LPP  F + GL++
Sbjct: 179 PADWGILVLILPPGGFLIAGLMV 201