Pairwise Alignments

Query, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 193 a.a., SoxR iron-sulfur cluster reduction factor component; inner membrane protein of electron transport complex from Escherichia coli BL21

 Score = 67.4 bits (163), Expect = 2e-16
 Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 6/157 (3%)

Query: 10  MLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNF--IP 67
           +  G V  NN V ++ LG+C  + VS  ++TA+ M LA TFV+  +++    I  +  IP
Sbjct: 7   LFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIP 66

Query: 68  NS---VRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEA-FAM 123
            +   +R +A + VIA +V   +MV++  +  L + L +F+ LI TNC ++G A     +
Sbjct: 67  LNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRLLGIFLPLITTNCAVLGVALLNINL 126

Query: 124 KYPPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNL 160
            +    + +     A G+ LV++  A +RE L   ++
Sbjct: 127 GHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADV 163