Pairwise Alignments

Query, 458 a.a., ATP-dependent RNA helicase DbpA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 459 a.a., ATP-dependent RNA helicase DbpA from Rhodanobacter sp000427505 FW510-R12

 Score =  454 bits (1169), Expect = e-132
 Identities = 240/452 (53%), Positives = 316/452 (69%), Gaps = 2/452 (0%)

Query: 3   FSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNK 62
           FSTL LK  LL ++ ++GY EMTP+QAQSLP +L G DVI Q +TGSGKTAAFGL LL  
Sbjct: 4   FSTLPLKPALLASVDTLGYAEMTPVQAQSLPPMLQGRDVIAQAQTGSGKTAAFGLSLLQA 63

Query: 63  LDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 122
           LD    R+Q LVLCPTRELADQV++ IR LA  I NVK+LTLCGG+P+GPQ+ SL H  H
Sbjct: 64  LDADTIRLQALVLCPTRELADQVSKAIRKLAANIPNVKLLTLCGGMPLGPQLASLSHDPH 123

Query: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFS 182
           I+VGTPGR+ +HL R  L    + +LVLDEADRML+MGF   +D II +  +  QTLLFS
Sbjct: 124 IVVGTPGRVQEHLKRGSLHGGGIKVLVLDEADRMLDMGFSEAIDDIIGRIAKHHQTLLFS 183

Query: 183 ATFPEQIQSIAKQIMYNPVMVKA-AVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPE 241
           AT+P++I++ ++++  +PV+V   A    ++ IEQ F +++  + ++ AL  LL   + +
Sbjct: 184 ATYPDEIRAASQRVQKDPVVVTVEAPAARRSAIEQQFIEVEPAQ-KLDALAQLLAGERGQ 242

Query: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301
            A+VFCN +R+   VA EL+  G+S LALHGD+EQRDRDE L++FAN+S  VLVATDVAA
Sbjct: 243 HALVFCNMRRDVDAVAQELDRRGYSALALHGDMEQRDRDEVLVRFANRSCNVLVATDVAA 302

Query: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDR 361
           RGLDI AL  V +Y VA+D + H HRIGRTGRAG  G A T    ++  K A +EE    
Sbjct: 303 RGLDIAALPLVLSYDVAHDPDTHTHRIGRTGRAGETGLAITLCTPRERPKAANIEEAQGV 362

Query: 362 EITSESLPSLSLLGSAPNAPTMITLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKILV 421
            +   +L      G   +   M TL ID G+++KLRPGDILGALTGD G+E   +GKI V
Sbjct: 363 PLPWRTLKLAPPRGKTLHLAPMKTLVIDAGRQDKLRPGDILGALTGDAGLEAKDIGKIDV 422

Query: 422 TDYRAYVAVNRKVAKKALSKITSGRIKGKSYR 453
              RAYVA++R +A KAL ++ +GRIKG+++R
Sbjct: 423 FATRAYVAISRALANKALERLRAGRIKGRNFR 454