Pairwise Alignments

Query, 458 a.a., ATP-dependent RNA helicase DbpA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

 Score =  495 bits (1274), Expect = e-144
 Identities = 254/452 (56%), Positives = 321/452 (71%), Gaps = 1/452 (0%)

Query: 2   AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61
           AF+TL L T +L NL ++GY  MTPIQAQSLP IL G+D+I Q KTGSGKTAAFG+GLLN
Sbjct: 7   AFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLN 66

Query: 62  KLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 121
            ++ + F  Q LVLCPTRELADQVA+E+R LAR   N+K+LTLCGGV +GPQI SLEHGA
Sbjct: 67  PINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGA 126

Query: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 181
           HIIVGTPGRI  HLD+  L L  LN LVLDEADRML+MGF   + +II ++P  RQTLLF
Sbjct: 127 HIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLF 186

Query: 182 SATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPE 241
           SAT+P  I+ +A   M NP  VK    H  N IEQ F ++ D + R++A+  +L  ++P+
Sbjct: 187 SATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEI-DPQQRLEAVTRVLGHYRPQ 245

Query: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301
           S V FC TK++ + V   L   G    ALHGDLEQRDRD+ L  FAN+S+ VLVATDVAA
Sbjct: 246 SCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAA 305

Query: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDR 361
           RGLDID LD V N  +A D E+H+HR+GRTGRAG KG A +     +G++   +E   + 
Sbjct: 306 RGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQNS 365

Query: 362 EITSESLPSLSLLGSAPNAPTMITLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKILV 421
            +  + L SL   G  P  P M TL I  G+K+KLRPGDILGALTGD GI G QVGKI +
Sbjct: 366 PLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAI 425

Query: 422 TDYRAYVAVNRKVAKKALSKITSGRIKGKSYR 453
            D++A+VAV R +AK+A+ ++ SG+IKG++ +
Sbjct: 426 FDFQAFVAVERALAKQAMQRLNSGKIKGRALK 457