Pairwise Alignments

Query, 568 a.a., amidase family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 483 a.a., glutamyl-tRNA amidotransferase from Pseudomonas simiae WCS417

 Score =  122 bits (305), Expect = 4e-32
 Identities = 145/551 (26%), Positives = 226/551 (41%), Gaps = 90/551 (16%)

Query: 7   VSIAELRAALESGRTTVVELVKSYLARVAAYDGPATETKLNALVVHNPD-ALKEAEASDA 65
           +++AE+   L     +  EL K+ LAR+A +D      K+N+ +    + AL +A+A+DA
Sbjct: 4   MTLAEIARGLADKTFSSEELTKTLLARIAEHD-----PKVNSFISLTEELALSQAKAADA 58

Query: 66  RRARGETLSPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQYDAFAVERLRAAGAICLG 125
           RRA GE+   L G P   KD +  +G+  + GS    +  A YDA  V +L AAGA+ LG
Sbjct: 59  RRANGES-GALLGAPIAHKDLFCTQGIRTSCGSKMLDNFKAPYDATVVSKLAAAGAVTLG 117

Query: 126 KTNMPPMANGGM-QRGHYGRAESPYNAEYLTAPFASGSSNGAGTGTAASYSAFGLAEETW 184
           KTNM   A G   +  +YG  ++P+N +++      GSS G+    AA +     A +T 
Sbjct: 118 KTNMDEFAMGSANESSYYGAVKNPWNLDHV----PGGSSGGSAAAVAARFLPAATATDTG 173

Query: 185 SSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYTRTMADMLEVLDVIVADDPI 244
            S R PA+   L    P+ G +S  G      ++D   P  RT  D   +L  +   D  
Sbjct: 174 GSIRQPAAFTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCAILLQGMAGFD-- 231

Query: 245 TRGDLWRLQPWVQIPKASTVRPESYLALAASADT-LKGKRFGVPRMYINKDELAGTSENP 303
                          + ST   E     +AS +T LKG R GVP+ Y           + 
Sbjct: 232 --------------KQDSTSIDEPVPDYSASLNTSLKGLRIGVPKEYF----------SA 267

Query: 304 GIGGPTGQRIHTRQSVIDLWEAARKALEAAGAEVIEVDFPLVSNCEGDRPGAPTVFNRGI 363
           G+     + +H           + K LE+ GA + E+  P       ++   P  +   +
Sbjct: 268 GLDPRIAELVHN----------SVKTLESLGAVIKEISLP------NNQHAIPAYY---V 308

Query: 364 VTPQFLHDELWELSGWAFDEFLRANNDPKLNKLEDVVGHLIFPHDLCTLPNREGDLAAGM 423
           + P      L    G  F    R  N                P DL  L  R      G 
Sbjct: 309 IAPAEASSNLSRFDGVRFG--YRCEN----------------PKDLTDLYKRSRGEGFGA 350

Query: 424 E-EYVNMAKRGLKSFDQIDSIPDGLRGLEKTRKLDLEDWMDGL-KLDAVLFPTVADVGPA 481
           E +   M      S    D+        +K R+L   D+M    ++D +L PT  +  PA
Sbjct: 351 EVQRRIMVGAYALSAGYYDAY---YLKAQKIRRLIKNDFMAAFEEVDVILGPTTPN--PA 405

Query: 482 DAHVNPASADIA-WSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDD 540
                     IA +   ++    NLA    G+P +++P G +   G+PVG+      + +
Sbjct: 406 WKIGAKTGDPIAEYLEDLYTITANLA----GLPGLSMPAGFVD--GLPVGVQLLAPYFQE 459

Query: 541 NNLLKFAGAFE 551
             LL  A  ++
Sbjct: 460 GRLLNVAHQYQ 470