Pairwise Alignments

Query, 637 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 627 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

 Score =  464 bits (1193), Expect = e-135
 Identities = 262/630 (41%), Positives = 372/630 (59%), Gaps = 10/630 (1%)

Query: 1   MISINQAQLIRGSKTLLDEASLTIYPGHKVGLVGANGTGKSSLLALIMGHLSLDKGEFSM 60
           MI+I         + LLD AS+ +  G K GLVG NG GKS+L  +I G L+ + G  ++
Sbjct: 1   MITITDLSARIAGRLLLDHASVALPAGVKAGLVGRNGAGKSTLFRIITGDLAAEGGSVTI 60

Query: 61  PSGWQIASVAQETPALDMSALEYVLDGDKEYRQLEADLHIAQEHNDGHAIATLHGKIDAI 120
           P   +I  VAQE P  + S +  VL  DKE   L A+   A+   D H IA +  ++  I
Sbjct: 61  PKLARIGQVAQEAPGTEESLISIVLAADKERSALLAE---AETATDPHRIAEIQMRLVDI 117

Query: 121 GGYAIRARAGALLAGLGFSEAEQNNPVKSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHL 180
             ++  ARA ++LAGLGF    Q  P  SFSGGWRMR+ LA  L    DLLLLDEPTN+L
Sbjct: 118 DAHSAEARASSILAGLGFDHEAQLRPASSFSGGWRMRVALASVLFAEPDLLLLDEPTNYL 177

Query: 181 DLDTMYWLEGWIKSYQGTLILISHDRDFIDEIVDEIVHVENQKLNFYKGNYSAFERIRAE 240
           DL+   WLE +I+ Y  T+I+ISHDRD ++  V+ IVH++ +KL FY+G Y  FER +AE
Sbjct: 178 DLEGTLWLEDYIRRYPHTVIIISHDRDLLNNAVNSIVHLDQKKLTFYRGGYDQFERQKAE 237

Query: 241 RMAQQQVAFERQQKERAHMQSFVDRFRYKASKAKQAQSRLKALERMTELLPSQADSPFYM 300
               Q  A  +    R H+QSF+DRFR KA+KA+QAQSR+KALERM  +     D    +
Sbjct: 238 ADELQMKAKVKNDAARKHLQSFIDRFRAKATKARQAQSRIKALERMGTVAAVIEDHVQPI 297

Query: 301 EFRPPEALP-NPLIKMEQVAVGY-GDKQILSKVHLNLVPGARIGLLGRNGAGKSTLIKLL 358
            F  PE  P +P++ +   AVGY   K IL +++L +    RI LLG NG GKST  K +
Sbjct: 298 TFPEPEKQPASPIVAINGGAVGYEPGKSILKQLNLRIDNDDRIALLGSNGNGKSTFAKFI 357

Query: 359 SGQLSPMTGLYEPNPGLNIGYFAQHQIEFLRLDDTPLQHLVRLAPNAREQELRNFLGGFG 418
           SG+L+P  G      GL IG+FAQHQ++ L  D+TP++H+ +L P A E ++R  +   G
Sbjct: 358 SGRLAPQAGDLRVASGLKIGFFAQHQLDDLVPDETPVEHVRKLMPLAPEAQVRARVAQMG 417

Query: 419 FNGDMALSPVRPFSGGEKARLVLALLVWQRPNLLLLDEPTNHLDLEMRHALTMALQTFEG 478
              +   +  +  SGGEKARL++ L  +  PNLL+LDEPTNHLD++ R AL  AL  + G
Sbjct: 418 LATEKMSTAAKDLSGGEKARLLMGLAAFHAPNLLILDEPTNHLDIDSRRALIEALNDYSG 477

Query: 479 AMVIVSHDRHLLRLTCSDYYLVDQGEVQAFDGDLDDYHQWLLDAAKAASANQAANSDDTK 538
           A++++SHDRHL+  T    +LV  G V+ F+GD+++Y   ++ + +       A +D T 
Sbjct: 478 AVILISHDRHLIEATVDRLWLVADGTVKTFEGDMEEYRDLVISSGRKKDDKTEAAADQT- 536

Query: 539 PAVDKKQQKRLEAELRQKVSPLKRKQAKLEIDQQKLSERLAELEHLLADGELYDQDNKAK 598
               K  Q++  AE R +++PLK+K  ++E    KL + +  L+  LAD  LY++   AK
Sbjct: 537 ---SKADQRKANAEKRAQLAPLKKKINEIESLTAKLEKLIQALDKELADPALYEK-APAK 592

Query: 599 LTSVLSERTSLTQTLEESEMQWLELQEEID 628
               + ER      L ++E QWL L  E +
Sbjct: 593 AALKVKERGEAASKLSDAEEQWLMLSSEYE 622