Pairwise Alignments

Query, 533 a.a., oxidoreductase, GMC family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 541 a.a., Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site from Sphingobium sp. HT1-2

 Score = 67.4 bits (163), Expect = 1e-15
 Identities = 119/576 (20%), Positives = 206/576 (35%), Gaps = 123/576 (21%)

Query: 19  DASQLQANQQFEADVVIVGTGAGGGVAAEILTQAGLSVIMIEAGPL---KSSSDFNMEER 75
           D SQ     +  ADV ++G GA G   A  L  AG  V+++E+G L   + ++D N  + 
Sbjct: 4   DLSQQTGALRRRADVCVIGAGAAGITTARRLLAAGHQVLLLESGGLDYERETADLNAGKN 63

Query: 76  VAYPNLYQQAAAMKTADKAIGIFQGRAVG----GSTTINWTTSIRTP---KEALAFWAQH 128
           V         A ++       I+ GR            +W      P    E   ++ Q 
Sbjct: 64  VGQTYYDLDDARLRFFGGTTAIWGGRCATLDPIDLQRRDWVAGSGWPLSWDELQDYYGQA 123

Query: 129 KSVAGLDPEALA-----------PWFDQMEQRLNIHEWNYEPNRNNGALKQGCINLGWDY 177
           + +  +  E  +           P FD+ E  L++  WN++P  N       C +L    
Sbjct: 124 RGIFEIGDEPASADALSAHGVPLPGFDRSE--LHMPVWNFDPRFNRFTF-DACQDL---- 176

Query: 178 TVIKRNVAGCWNTGYCGMGCPVNAKQSMLVTTIPSALEKGAQLISRAKVVKIEHHNGQVF 237
               R+   C                               ++I+ A V +I   +G + 
Sbjct: 177 ----RDHPRC-------------------------------EIITHASVTRIVTRDGAIS 201

Query: 238 ALKAQALDVNLRPTAVELLFKAKHYILSAGAIHTPTLMMRSEVPDPHQLLGKRTFLHPTV 297
            ++A+AL          L  +A+ ++L+AG I    L++ S + +    +G+    HP  
Sbjct: 202 RIEAKAL------AGAHLHVEARAFVLAAGGIENARLLLASNIGNERDQVGRHFMEHPHA 255

Query: 298 LSGGVF-------------ADTINAHSGAP------------------------QSIYSD 320
             G +                 I+ H  A                         Q   + 
Sbjct: 256 RGGRIVDAKAWPLLKAFGRRHRISGHDMAALITPSADLQQREGLLNSSLTIVGRQPARAS 315

Query: 321 EFVWKNGADGELGYKLEVPPVHP----ILIASKTIGYGVSHAE-----LMAQFNQLQVTI 371
           +F W   A G L  K ++ P        ++  K   +   H +     L+ +  +L++ +
Sbjct: 316 QF-WGMRAYGSL--KHDMSPTRSGRRLWMMTKKAATWAQRHVDPLRPWLLHKAGKLEIAL 372

Query: 372 AL-IRDGYHPDSQGGQVHLTPTGFSLDYPLTDAFWRAVRRAYASMAELQFSAGALKVLPI 430
            +      +PDS+   V LT    +L  P     WR       S+  L    G  ++  +
Sbjct: 373 LVRAEQAPNPDSR---VLLTKERDALGVPRVALDWRLSAIDKHSVTGLVDGLGR-ELKRL 428

Query: 431 SDGMPYLSSWKEAKESIAQMDLAPLKTVVASAHVMGGCPLGEDEKLSMVNSYGQSHYLNN 490
             G    + W +    + + D       +   H MG   +  D +  +V++ G+ H   N
Sbjct: 429 GMGRVERADWLDEPGELWRNDPLISSHAIGGYHHMGTTRMATDPRQGVVDADGRVHGQAN 488

Query: 491 LSVMDGSIFPTSLGANPQLSIYGITARNATALAQKL 526
           L V+  SIFPTS  ANP L+I  +  R A  L+  L
Sbjct: 489 LYVVGSSIFPTSSWANPTLTIAALALRTADRLSVAL 524