Pairwise Alignments

Query, 533 a.a., oxidoreductase, GMC family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 594 a.a., gluconate 2-dehydrogenase flavoprotein subunit from Pseudomonas putida KT2440

 Score = 57.4 bits (137), Expect = 1e-12
 Identities = 127/598 (21%), Positives = 223/598 (37%), Gaps = 123/598 (20%)

Query: 30  EADVVIVGTGAGGGVAAEILTQAGLSVIMIEAGPLKSSSDFNMEERVA-----------Y 78
           + D VIVG G  G + A+ LT+AGL V+ +E GP++ +       +V            +
Sbjct: 7   KVDAVIVGFGWAGAIMAKELTEAGLHVVALERGPMQDTYPEGSYPQVIDELTYSVRKKLF 66

Query: 79  PNLYQQAAAMKTA-------DKAIGIF-QGRAVGGSTTINWT-------------TSIRT 117
            ++ ++   ++ +       ++ +G F  G+ VGG+  ++W+              S   
Sbjct: 67  VDVSKETVTVRHSVNDVALPNRQLGAFLPGKGVGGAG-LHWSGVHFRVDPVELRLRSHYE 125

Query: 118 PKEALAFWAQHKSVA--GLDPEALAPWFDQMEQRLNI--HEWN--------------YEP 159
            +    F  +  ++   G+  E L P+FD  E+        W               Y P
Sbjct: 126 ERYGRTFIPEGMTIQDFGVSYEELEPYFDFAEKVFGTSGQAWTVKGQVVGEGKGGNPYAP 185

Query: 160 NRNNG-------------ALKQGCINLGWD-YTVIKRNVAG------------CWNTGYC 193
           +R+N                ++   +LG+  Y +   N +G            C   G+C
Sbjct: 186 DRSNPFPLPAQKNVVSARLFEKAATSLGYKPYNLPSANTSGPYTNPYGAQMGPCNFCGFC 245

Query: 194 -GMGCPVNAKQSMLVTTIPSALE-KGAQLISRAKVVKIEHHNGQVFALKAQALDVNLRPT 251
            G  C + +K S  V  +P+  +    +L   A V+++   + +  A     +D   R  
Sbjct: 246 SGYVCYMYSKASPNVNILPALRQVPNFELRPNAHVLRVNLDDSKRRATGVTYIDAQGR-- 303

Query: 252 AVELLFKAKHYILSAGAIHTPTLMMRSEVPDPHQLLGK-----RTFLHPTVLSGGVFAD- 305
             E+   A+  IL+A   +   LM+ S +  P+  +       R F +  + +   F D 
Sbjct: 304 --EVEQPAELVILAAFQFNNVRLMLLSGIGKPYDPVKNEGVVGRNFAYQNMGTVKAFFDK 361

Query: 306 ---TINAHSGAPQSIYSDEFVWKNGADGELGYKLEVP---------PVHPILIASKTIGY 353
              T N        I  D+F   N   G  G+    P         P+        T  +
Sbjct: 362 DTYTNNFIGAGGNGIAIDDFNADNFDHGPHGFVGGSPMWVNQAGSRPIAGTSNPPGTPAW 421

Query: 354 GVSHAELMAQFNQLQVTIALIRDGYHPDSQGGQVHLTPTGFSLDYPLTDAFWRAVRRAYA 413
           G +  +  A +   QV++     G H   +G  + L PT         DA+ + + R   
Sbjct: 422 GSAWKKATADYYTHQVSMDA--HGAHQSYRGNYLDLDPT-------YRDAYGQPLLRMTF 472

Query: 414 SMAEL-----QFSAGAL-KVLPISDGMPYLSSWKEAKESIAQMDLAPLKTVVASAHVMGG 467
              E      QF    L K+    +        K+ K+           T   + H+ GG
Sbjct: 473 DWQENDIKMNQFMVDKLSKIAQAMNPKAIAVLGKQVKDHFNT-------TSYQTTHLNGG 525

Query: 468 CPLGEDEKLSMVNSYGQSHYLNNLSVMDGSIFPTSLGANPQLSIYGITARNATALAQK 525
             +G D K S +N Y QS  ++N+ V   S FP  LG NP   +  +T  +A A+ ++
Sbjct: 526 AIMGTDPKTSALNRYLQSWDVHNVFVPGASAFPQGLGYNPTGLVAALTYWSARAIREQ 583