Pairwise Alignments

Query, 438 a.a., polyA polymerase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 460 a.a., poly(A) polymerase from Pseudomonas putida KT2440

 Score =  396 bits (1017), Expect = e-115
 Identities = 208/436 (47%), Positives = 288/436 (66%), Gaps = 11/436 (2%)

Query: 3   LVPRDAHSISRKQISENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPE 62
           ++ +  HS+ R Q S +A+ ++ RL  AG+QAYLVGG VRDL+LG+ PKDFDV T+ATPE
Sbjct: 25  VINKSQHSLQRHQFSRHAVNIVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPE 84

Query: 63  EIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGESNE---KISKANAEGRLLRDN 119
           +++  FRN R++GRRF+L H+ FGR++IEVATFR HH E ++     S  NA GR+LRDN
Sbjct: 85  QVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQGDAHRSSHNASGRILRDN 144

Query: 120 VYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRM 179
           VYG ++EDA+RRDFT+NALYYD     I  Y  G+ D++   LRLIGDP  RY+EDPVRM
Sbjct: 145 VYGTLEEDAQRRDFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRM 204

Query: 180 LRAVRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAVANFDMMQEY 239
           LRAVRFA KL   I++ T  PI+ LAP+L++IP AR++EE LKLF +G+    F+M+ + 
Sbjct: 205 LRAVRFAAKLDFGIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDL 264

Query: 240 KLFAPLFPQVDALLKEAPKGPAMKMVQAIMKSTDDRVNEDKPVTPSFFYAAILWYPLRQR 299
           +LF PLFP     L E P      + QA + +TD RV + KPVTP+F +AA+LW  L  R
Sbjct: 265 ELFEPLFPASAHALDERPTYTHTLISQA-LNNTDLRVKQGKPVTPAFLFAALLWPALPAR 323

Query: 300 AEDIAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFSTPAKDIWQLQLRFERSQGTRAF 359
              +    G+    A   A  D++ +QC  I+IP+RF+ P ++IW +Q R  R  G RA 
Sbjct: 324 VLHLQ-NQGVPPIPAMNGAAHDLIAEQCARIAIPKRFTLPIREIWDMQERLPRRSGKRAD 382

Query: 360 KLLEHPKFRAAYDLLLLRGEVEGGNLAKSAAWWQQFVEADETERLTIARSGNKASGNRNR 419
            LL++P+FRA YD LLLR E  G    +   WW  + +A+++ER  + R      G+R+ 
Sbjct: 383 MLLDNPRFRAGYDFLLLR-ESAGEETDELGQWWTDYQDANDSERREMIRE----LGSRDE 437

Query: 420 NTPQRRRRRPSGAKAK 435
           +   R+R+R SG+K K
Sbjct: 438 SAGPRKRKR-SGSKRK 452