Pairwise Alignments

Query, 409 a.a., D-3-phosphoglycerate dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 531 a.a., D-3-phosphoglycerate dehydrogenase from Agrobacterium fabrum C58

 Score =  188 bits (477), Expect = 4e-52
 Identities = 114/325 (35%), Positives = 181/325 (55%), Gaps = 13/325 (4%)

Query: 12  KILLLEGVHQSAVDVFERAGYTNIEYHKASLGDEALHESIKDAHFIGIRSRTQLSADVLK 71
           ++L+ + + ++AV +F   G       K     + L E I +   + IRS T+ +  +++
Sbjct: 4   RVLVSDELSETAVQIFRDRGVEVDFQPKLGKDKDKLAEIIGNYDGLAIRSATKATEKLIE 63

Query: 72  RAEKLIAIGCFCIGTNQVDLATAESLGIPVFNAPFSNTRSVAELVLGEIIMLMRGIPERN 131
            A  L  IG   IG + VD+  A   GI V N PF N+ + AE  +  +  + R +P  +
Sbjct: 64  AATNLKVIGRAGIGVDNVDIPAASRRGIIVMNTPFGNSITTAEHAIALMFAVARQLPAAD 123

Query: 132 AIAHRGGWMKTAAGSYEVRGKTLGVIGYGHIGTQLGIL-AETLGMRVVFFDIEDKLPLGN 190
           +    G W K+     E+ GKTLGVIG G+IG   GI+ +  LG+++     +  L    
Sbjct: 124 SSTQAGKWEKSKFMGVEITGKTLGVIGAGNIG---GIVCSRALGLKMHVLAYDPFLSPER 180

Query: 191 AQQIH----SMEQLLAQADVVSLHVPETPQTKDMISTAEFAAMRKGSIFINASRGTVVDI 246
           AQ++      +++LLAQAD ++LHVP T +T+ +++    A  +KG   +N +RG +VD 
Sbjct: 181 AQEMGVTKVELDELLAQADFITLHVPMTDKTRGILNAENLAKTKKGVRIVNCARGGLVDE 240

Query: 247 DALTVALKERHLAGAAIDVFPVEPQSNDDEFISPLRGLDNVLLTPHVGGSTAEAQENIGI 306
            AL  A+K  H+AGA  DVF VEP +      SPL GL NV+ TPH+G ST EAQEN+ +
Sbjct: 241 AALAEAIKSGHVAGAGFDVFEVEPATE-----SPLFGLPNVVCTPHLGASTTEAQENVAL 295

Query: 307 EVAGKLAKYSDNGSTVSAVNFPEVS 331
           +VA +++ Y   G+  +A+N P ++
Sbjct: 296 QVAEQMSDYLVKGAVSNAINMPSIT 320



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 40/200 (20%), Positives = 77/200 (38%), Gaps = 10/200 (5%)

Query: 208 SLHVPETPQTKDMISTAEFAAMRKGSIFINASRGTVVDIDALTVALKERHLAGAAIDVFP 267
           S+   E P+ K  I  A+      G +  +A++   +  D  T  +  + L  A +    
Sbjct: 318 SITAEEAPRLKPFIRLADVLGSFVGQVQESATKEIEILYDGATANMNTKALTSALLAGL- 376

Query: 268 VEPQSNDDEFISP--LRGLDNVLLTPHVGGSTAEAQENIGIEVAGKLAKYSDNGSTVSA- 324
           +  Q  D   +S   +     ++L+      T      I + V  +    S  G+  S  
Sbjct: 377 IRSQVADVNMVSAPVMIKEKGIILSEVKRDKTGVYDGYIKLTVKTENQIRSVAGTVFSDG 436

Query: 325 ----VNFPEVSLPMHKGTSRLLHIHQNRPGVLIKINKAFSEKGINIAAQYLQTTAEIG-- 378
               +    +++    G+  +   + + PG++  +     E G+NIA   L    E G  
Sbjct: 437 KPRFIQIKNINMDADVGSHMIYITNTDVPGMIGFMGTTLGEAGVNIANFQLGREKEAGDA 496

Query: 379 YVVMEVDTHQAEEALVELKA 398
             ++ VD   +EE L +L+A
Sbjct: 497 IALLYVDGPVSEEVLDKLRA 516