Pairwise Alignments

Query, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 785 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  295 bits (756), Expect = 1e-83
 Identities = 187/514 (36%), Positives = 300/514 (58%), Gaps = 32/514 (6%)

Query: 1017 TELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKN 1076
            + L L + EL  A+  A   ++A+  FLANMSHEIRTP+N ++GM  L L   L  +Q+ 
Sbjct: 283  SSLSLSNQELEQARSRALDMAQARAAFLANMSHEIRTPLNGMLGMIALALDNPLPSEQRQ 342

Query: 1077 YLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIE 1136
             L     + + L+ ++NDILD SK +AG+L++E ++F + +M+ED +++ S+  AQ  +E
Sbjct: 343  QLAIAHDSGKVLVELLNDILDLSKFDAGQLELERIAFDMGSMVEDTANLLSQNTAQS-VE 401

Query: 1137 LLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSV 1196
            L   +A + P  +LGDP R+ Q++ NL++NA+KFT  G V + L+ +        +R  V
Sbjct: 402  LTCLIASDFPSSVLGDPTRVRQIVSNLLSNALKFTRFGRVDVRLAAIVGG-----VRLEV 456

Query: 1197 RDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHG 1256
            RD+GIG+ ++ Q+++F+ FTQA    TR+YGGTGLGLA+++ L + M G + + S+ G G
Sbjct: 457  RDTGIGIPEDAQARIFQPFTQAGAGITRQYGGTGLGLALTRNLCKAMQGHLHIRSEPGFG 516

Query: 1257 STFFFTVKLCISSGQKLFVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDE 1316
            S F  T +L ++   +      L G    ++   +   ++++  L + G    T +  D 
Sbjct: 517  SCF--TAELPLTVHTEAIPPAPLHGRVAALSAAGSGLNELLQHLLPAWGL---TYQRHD- 570

Query: 1317 AIMRCSQQEYAVALIDWKMPNLDGIETAKQIKQQTKNAPRILMVSAHANQDFLTQIEQLG 1376
                 S      A+ID  +   D +E   +++   K    IL+V+A+ N  FL   + L 
Sbjct: 571  -----SCATLVAAVIDLLIT--DDVEHLFELRPALKTP--ILLVTAYGN--FLPNEQSLA 619

Query: 1377 LAGY--ISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPELLLPLKGK-RILLVEDNE 1433
            LA    +++P++ + L   +   L   G  P    +  +A   +   +G+ RILLVEDN 
Sbjct: 620  LAPLHQLARPLARNALYQTLRRTL--QGHEP----EHPLAIPAITQEQGRARILLVEDNP 673

Query: 1434 MNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKAIRQRP 1493
            +N  VA   L ++G  + +AT G  AL+ LA++ FDLVLMDC MPVMDGY+A++ IRQ  
Sbjct: 674  VNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGYEASRRIRQSG 733

Query: 1494 ELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKP 1527
               +LP++A+TANAM  ++E C  AGMND++AKP
Sbjct: 734  RWPELPIVALTANAMPEERERCRAAGMNDYLAKP 767



 Score = 27.3 bits (59), Expect = 0.007
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1492 RPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLGAPVP 1546
            RP L + P++ +TA       E  L       +A+P+  N LYQTL + L    P
Sbjct: 595  RPAL-KTPILLVTAYGNFLPNEQSLALAPLHQLARPLARNALYQTLRRTLQGHEP 648