Pairwise Alignments

Query, 452 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 481 a.a., sodium:alanine symporter from Pseudomonas simiae WCS417

 Score =  269 bits (688), Expect = 1e-76
 Identities = 160/443 (36%), Positives = 243/443 (54%), Gaps = 21/443 (4%)

Query: 6   LLSSLNGIVWGPITLCLLVGTGVYLTTRLKLIQVFRLPMALSLLFKPAKGH-GDLSSFAA 64
           +L  +N  + G + + L+VG G Y T R + +Q+       S+     K   G LSSF A
Sbjct: 1   MLEVINDFLSGKVLIVLIVGLGGYFTIRSRFVQLRHFFHMFSVFKDSLKSSAGQLSSFQA 60

Query: 65  LCTALSATIGTGNIVGVATAIKMGGPGALFWMWLAAFFGMATKYAECMLAVKYRTTDARG 124
           L  +L+  +G GNI GV  A+ +GGPGA+FWMW+ A  GM++ + EC L   Y+ TDA G
Sbjct: 61  LMLSLAGRVGAGNIAGVGIAVTLGGPGAVFWMWVTALVGMSSSFIECSLGQLYKRTDAEG 120

Query: 125 QIAGGPMYYIERGLGLRWMAKLFA---LFGVGVAFFGIGTFAQVNAISDALTIAFDVPTW 181
              GGP YYI+ GL  RW+  + A   L   G AF G+    Q +A++ +L  AF + T 
Sbjct: 121 TYRGGPAYYIQHGLQKRWLGMVMAFLLLVTFGFAFNGL----QAHAVTHSLNNAFGLDTT 176

Query: 182 TTALVLTLLVAAVTLGGVKRISNVAQKLVPAMSIGYVLACVWILLGFAEAILPALQLVVE 241
            T L L +L+  V +GG+KRI+++A  LVP  ++ Y+   +++++   + +   L  +V+
Sbjct: 177 YTGLALAVLLGLVFIGGIKRIASIADLLVPVKTLVYIAVTLYVIVLQFDHVPAMLATIVK 236

Query: 242 SAFTPVSAAGGFLGATVAQAIQMGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLVSMT 301
           SAF    A GG +G+    AI MG+ RGVF+NE+GLGSAP  AA A    P+ QG+V   
Sbjct: 237 SAFGLDQAFGGLVGS----AIIMGVKRGVFANEAGLGSAPNVAAVASVEHPIAQGVVQAF 292

Query: 302 GTFFDTIIICTMTGLVLIITGVWS----GDTAGAAMTSAAFSLGGSAAIGQYLVTIALVC 357
             F DT +ICT T L+++++G ++    GD       S A  +G     G+  +++AL  
Sbjct: 293 SVFLDTFVICTCTALLILLSGFYTPGFEGDGIALTQNSLAAVVGD---WGRMFISVALAL 349

Query: 358 FAFTTILGWHYYGERCWYYLVG--ERGLRAYQIVFLGLIAGGAFIKLDVIWLLADTVNGL 415
           F FT+I+  +Y GE    +LVG   + L  Y+ + L LI  G+   L  ++  AD    +
Sbjct: 350 FVFTSIMYNYYLGESNLRFLVGNNRKVLMGYRALVLVLIFWGSIENLSTVFAFADITMTM 409

Query: 416 MAIPNLIAIIGLRHIIIAETQSY 438
           +A  NL A+  L  I +     Y
Sbjct: 410 LAFVNLFALAFLFKIAMRILNDY 432