Pairwise Alignments

Query, 452 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 476 a.a., Uncharacterized transporter YaaJ from Escherichia coli ECRC62

 Score =  281 bits (718), Expect = 4e-80
 Identities = 168/445 (37%), Positives = 247/445 (55%), Gaps = 23/445 (5%)

Query: 8   SSLNGIVWGPITLCLLVGTGVYLTTRLKLIQV-FRLPMALSLLFKPAKGHGDLSSFAALC 66
           S +N ++WG + + LL G G + T R   +Q  +      SL        G L+SF +LC
Sbjct: 6   SFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLC 65

Query: 67  TALSATIGTGNIVGVATAIKMGGPGALFWMWLAAFFGMATKYAECMLAVKYRTTDARGQI 126
           T+L+A +G+GN+ GVA AI  GGPGA+FWMW+AAF GMAT +AEC LA  Y+  D  GQ 
Sbjct: 66  TSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQF 125

Query: 127 AGGPMYYIERGLGLRWMAKLFALF---GVGVAFFGIGTFAQVNAISDALTIAFDVPTWTT 183
            GGP +Y+ RGLG+RWM  LFA+F     G+ F G+    Q NA++ AL+ +FD P   T
Sbjct: 126 RGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGV----QANAVARALSFSFDFPPLVT 181

Query: 184 ALVLTLLVAAVTLGGVKRISNVAQKLVPAMSIGYVLACVWILLGFAEAILPALQLVVESA 243
            ++L +        G+  ++ + Q  VP M+I +VL  + I +     +   +  + ESA
Sbjct: 182 GIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLTSMVICVINIGQLPHVIWSIFESA 241

Query: 244 FTPVSAAGGFLGATVAQAIQMGIARGVFSNESGLGSAPIAAAAAKT--NEPVEQGLVSMT 301
           F    AAGG  G T++QAI  G  R +FSNE+G+GSAP AAAAA +    P  QG+V M 
Sbjct: 242 FGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSAPNAAAAAASWPPHPAAQGIVQMI 301

Query: 302 GTFFDTIIICTMTGLVLIITGVWSGDTA-----GAAMTSAAFS-LGGSAAIGQYLVTIAL 355
           G F DT++ICT + +++++ G    DT      G  +   A   L GS   G   VT+ +
Sbjct: 302 GIFIDTLVICTASAMLILLAG---NDTTYMPLEGIQLIQKAMRVLMGS--WGAEFVTLVV 356

Query: 356 VCFAFTTILGWHYYGERCWYY--LVGERGLRAYQIVFLGLIAGGAFIKLDVIWLLADTVN 413
           + FAF++I+  + Y E   ++  L   + +   +I     + GG  + L ++W LAD + 
Sbjct: 357 ILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIM 416

Query: 414 GLMAIPNLIAIIGLRHIIIAETQSY 438
             MAI NL AI+ L  ++      Y
Sbjct: 417 ACMAITNLTAILLLSPVVHTIASDY 441