Pairwise Alignments

Query, 826 a.a., periplasmic nitrate reductase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 960 a.a., putative Formate dehydrogenase, alpha subunit from Pseudomonas putida KT2440

 Score =  155 bits (391), Expect = 1e-41
 Identities = 137/525 (26%), Positives = 220/525 (41%), Gaps = 59/525 (11%)

Query: 45  CRFCGVGCSVLVGTKAGKVVATKGDPESPVNRGLNCIKGYFLSKIMYGKDRLTTPLLRMK 104
           C +CGVGCS     K  ++V    D     N G  C+KG F        DR+T P++R +
Sbjct: 250 CAYCGVGCSFRAEIKGDQLVRMVPDKNGGANHGHACVKGRFAWGYATHPDRITKPMIRKR 309

Query: 105 DGKYHKEGEFTPVSWDVAFDTMAAKWKHSIATKGPTSVGMFGSGQWTIWEGYAASKLHKA 164
                 E  +  VSWD A    A++++      G  S+G   S + T  E Y   KL + 
Sbjct: 310 -----LEDPWQEVSWDEAVTYAASEFRRIQLKYGRDSIGGITSSRCTNEEAYLVQKLVRT 364

Query: 165 GFLTNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDLEAADHFVLWGANMAEMHPILWA 224
            F  NN+D  AR C +    G  +T G       +D +  AD  ++ GAN  + HP+  +
Sbjct: 365 AFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQSFDSVMQADVVLVIGANPTDAHPVFGS 424

Query: 225 RLSDRRLSSKDCRVHVLSTFENRSFDLADNP-------MVFHPQSDLVILNYIANYIIQN 277
           +L  +R   +  R+ V+   + R  DL D+P       +   P +++ +LN +A+ I+  
Sbjct: 425 QL--KRRLRQGARLIVI---DPRRIDLVDSPHARADLHLQLRPGTNVAMLNALAHVIVTE 479

Query: 278 KAVNTDFVTKHTKFALGVDDIGYGLRPDHPLEKKAKNPGNGKSTPISFDEYAKFVS--TY 335
             +   F+                               + +     F  +  FVS    
Sbjct: 480 GLLAQSFI-------------------------------DARCETGDFARWRDFVSLPDN 508

Query: 336 TLEYAAKMSGVEPEKLETLAKAYADPKAKVMSLWTMGINQHVRGVWANNMLYNIHLLTGK 395
             E    + GV  E++   A+ YA         + +G+ +H +G  A   + N+ + TG 
Sbjct: 509 APEVLGPVCGVPAEQIRAAARLYA-TGGNAAIYYGLGVTEHSQGSTAVMGIANLAMATGN 567

Query: 396 IATPGNSPFSLTGQPSACGTAREVGTFAHRLPADMVVDNDKHRAITEKMWQVPEGTIPPK 455
           I   G     L GQ +  G+  ++G+F H LP    V N+  RA  E+ W V   T+ P 
Sbjct: 568 IGREGVGVNPLRGQNNVQGSC-DMGSFPHELPGYRHVSNEGVRAEFEQAWGV---TLQPD 623

Query: 456 PGYHAVLQSRMLKDGKLNCYWTMCTNNMQAGPNINEEMYPGFRNPENFIVVSDPYPTVTA 515
           PG           DG     +    +  Q+ PN  + +       E  +VV D +   TA
Sbjct: 624 PGLRIPNMFEAALDGSFKALYCQGEDIAQSDPN-TQHVTAALLAME-CVVVQDIFLNETA 681

Query: 516 MAADLILPTAMWVEKEGAYGNAERRTHMWHQQVKAPEGAKSDLWQ 560
             A + LP + ++EK+G + NAERR     ++V  P   K+D W+
Sbjct: 682 KFAHVFLPGSSFLEKDGTFTNAERRISR-VRKVMEPLAGKAD-WE 724



 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 690 GKAVIFALPYEPAAEEPNSEYDLWMSTGRVLEHWHTGSMTARVPELYRAYPDA-QIFMHP 748
           GK       Y P  E+ N+ Y L ++TGR+L  ++ G+ T R   +  A+ DA ++ +HP
Sbjct: 793 GKGRFMLTGYVPTDEKVNNRYPLLLTTGRILSQYNVGAQTRRTGNV--AWHDADRLEIHP 850

Query: 749 EDAKARGLQRGDEVLVASPRGEIKTRVETKGRNKPPRGVVFMPFFDARQLVNKLILDATD 808
            DA++RG+Q GD V + S  G+   R +   R  P  GVV+  F       N +  D +D
Sbjct: 851 TDAESRGIQDGDWVGIGSRAGQTVLRAKVSTRVAP--GVVYTTFHFPESGANVITTDNSD 908

Query: 809 PLSKETDFKKCPVKVMK 825
             +   ++K   V+V+K
Sbjct: 909 WATNCPEYKVTAVEVVK 925