Pairwise Alignments

Query, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 298 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  148 bits (374), Expect = 1e-40
 Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 7/290 (2%)

Query: 6   KTLQCFLTLVETENFTRAAQKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELTQAGQL 65
           K L+ F+ ++    FT+A +   I+Q  +SK + +LE+SLG  LL R    + LT AG++
Sbjct: 4   KQLRSFVEVIHRGGFTQAGKSLHISQSAVSKQVAQLEQSLGTPLLERTGSHIRLTAAGEV 63

Query: 66  FEHSAREILGQWHRLQEDMSNLSGLKSGRLRLGVCPMMS--SLIIGLLTSYRKRYPGVEL 123
               A  +L     L  ++ ++  L  G LRLG+ P+++  +L  GL   YR+RYP V +
Sbjct: 64  VLQRAEAMLRLQTELLSELDDMQQLTRGELRLGL-PLLAGDTLFAGLFAEYRRRYPNVTI 122

Query: 124 QMYEYGGFGCEQALLNNSLDIAFTALPTTHETELINQPLTKYPLLACLPEAHPLAAKSYL 183
           Q+ E G    EQA+LN  LD+       + +     Q     PL A LP  HPLA  + +
Sbjct: 123 QLLEGGSRTIEQAILNGELDVG--GCLNSSDPAFARQAFCDEPLDALLPMDHPLAQNAQV 180

Query: 184 SWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLATMVEADMGLAILP 243
             ++    PF++Y   F L   + +  ++ G       RSGQ DFLA +V A  G+ +LP
Sbjct: 181 RLEELADTPFLMYQRSFVLNDRLIQACQQVGFTPREIGRSGQADFLAALVAAGQGVVLLP 240

Query: 244 EPICQKLSNSKLVFRPMQPA--LTWDLALIWRQNLPLTPAANALLELSKQ 291
             + + L    +V   ++    L WD+A  WR+   L+ AA A L L ++
Sbjct: 241 SVVARGLLRPGVVRLTLKAPDYLRWDIAFTWREGAYLSKAAQAWLALLRE 290